Mercurial > repos > iuc > medaka_snp

changeset 1:630e6aeeb7e8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7105600c6ba7a49e8933e1a1357566fc2126df58
author iuc
date Tue, 26 Sep 2023 10:11:25 +0000
parents 179342c7b86c
children
files macros.xml snp.xml
diffstat 2 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Oct 12 07:43:59 2022 +0000
+++ b/macros.xml	Tue Sep 26 10:11:25 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.7.2</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="bio_tools">
         <xrefs>
@@ -37,10 +37,10 @@
             #if $reference_source.ref_file.ext.endswith(".gz")
                 gunzip -c '$reference_source.ref_file' > reference.fa &&
             #else
-                ln -f -s '$reference_source.ref_file' reference.fa &&
+                cp '$reference_source.ref_file' reference.fa &&
             #end if
         #else:
-            ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
+            cp '$reference_source.ref_file.fields.path' reference.fa &&
         #end if
     ]]></token>
 
--- a/snp.xml	Wed Oct 12 07:43:59 2022 +0000
+++ b/snp.xml	Tue Sep 26 10:11:25 2023 +0000
@@ -140,6 +140,7 @@
 This module decodes probabilities to SNPs but NOT indels.
 
 For a more general solution see the medaka *variant* tool.
+
 ----
 
 .. class:: infomark