Mercurial > repos > iuc > medaka_variant_pipeline

comparison convert_VCF_info_fields.py @ 8:1040a307be0c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443"
author iuc
date Tue, 23 Feb 2021 20:13:07 +0000
parents 08e0d74aac22
children 7623e5888be9
comparison
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7:08e0d74aac22 8:1040a307be0c
84 info.append("DPSPS=%d,%d" % (dpspf, dpspr)) 84 info.append("DPSPS=%d,%d" % (dpspf, dpspr))
85 85
86 if dpsp == 0: 86 if dpsp == 0:
87 info.append("AF=NaN") 87 info.append("AF=NaN")
88 else: 88 else:
89 af = dp4[2] + dp4[3] / dpsp 89 af = (dp4[2] + dp4[3]) / dpsp
90 info.append("AF=%.6f" % (af)) 90 info.append("AF=%.6f" % (af))
91 if dpspf == 0: 91 if dpspf == 0:
92 info.append("FAF=NaN") 92 info.append("FAF=NaN")
93 else: 93 else:
94 faf = dp4[2] / dpspf 94 faf = dp4[2] / dpspf