Mercurial > repos > iuc > medaka_variant_pipeline

comparison macros.xml @ 10:7623e5888be9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 0faf0ade3f13d7c78d93869823ea9fdf25c21b13"
author iuc
date Thu, 22 Apr 2021 20:24:49 +0000
parents 336b3def9b2b
children 11fedf536104
comparison
equal deleted inserted replaced
9:336b3def9b2b 10:7623e5888be9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.0.3</token> 3 <token name="@TOOL_VERSION@">1.3.2</token>
4 <token name="@PROFILE@">18.01</token> 4 <token name="@PROFILE@">20.01</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">medaka</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">medaka</requirement>
8 <yield /> 8 <yield />
9 </requirements> 9 </requirements>
46 <xml name="b" token_argument="-b"> 46 <xml name="b" token_argument="-b">
47 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> 47 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/>
48 </xml> 48 </xml>
49 <xml name="model" token_argument="-m" token_label="Select model"> 49 <xml name="model" token_argument="-m" token_label="Select model">
50 <param argument="@ARGUMENT@" type="select" label="@LABEL@"> 50 <param argument="@ARGUMENT@" type="select" label="@LABEL@">
51 <option value="r10_min_high_g303">r10_min_high_g303</option>
52 <option value="r10_min_high_g340">r10_min_high_g340</option>
53 <option value="r103_min_high_g345">r103_min_high_g345</option> 51 <option value="r103_min_high_g345">r103_min_high_g345</option>
54 <option value="r103_min_high_g360">r103_min_high_g360</option> 52 <option value="r103_min_high_g360">r103_min_high_g360</option>
55 <option value="r103_prom_high_g360">r103_prom_high_g360</option> 53 <option value="r103_prom_high_g360">r103_prom_high_g360</option>
56 <option value="r103_prom_snp_g3210">r103_prom_snp_g3210</option> 54 <option value="r103_prom_snp_g3210">r103_prom_snp_g3210</option>
57 <option value="r103_prom_variant_g3210">r103_prom_variant_g3210</option> 55 <option value="r103_prom_variant_g3210">r103_prom_variant_g3210</option>
56 <option value="r10_min_high_g303">r10_min_high_g303</option>
57 <option value="r10_min_high_g340">r10_min_high_g340</option>
58 <option value="r941_min_fast_g303">r941_min_fast_g303</option> 58 <option value="r941_min_fast_g303">r941_min_fast_g303</option>
59 <option value="r941_min_high_g303">r941_min_high_g303</option> 59 <option value="r941_min_high_g303">r941_min_high_g303</option>
60 <option value="r941_min_high_g330">r941_min_high_g330</option> 60 <option value="r941_min_high_g330">r941_min_high_g330</option>
61 <option value="r941_min_high_g340_rle">r941_min_high_g340_rle</option> 61 <option value="r941_min_high_g340_rle">r941_min_high_g340_rle</option>
62 <option value="r941_min_high_g344">r941_min_high_g344</option> 62 <option value="r941_min_high_g344">r941_min_high_g344</option>
63 <option value="r941_min_high_g351">r941_min_high_g351</option> 63 <option value="r941_min_high_g351">r941_min_high_g351</option>
64 <option value="r941_min_high_g360">r941_min_high_g360</option> 64 <option value="r941_min_high_g360" selected="true">r941_min_high_g360</option>
65 <option value="r941_prom_fast_g303">r941_prom_fast_g303</option> 65 <option value="r941_prom_fast_g303">r941_prom_fast_g303</option>
66 <option value="r941_prom_high_g303">r941_prom_high_g303</option> 66 <option value="r941_prom_high_g303">r941_prom_high_g303</option>
67 <option value="r941_prom_high_g330">r941_prom_high_g330</option> 67 <option value="r941_prom_high_g330">r941_prom_high_g330</option>
68 <option value="r941_prom_high_g344">r941_prom_high_g344</option> 68 <option value="r941_prom_high_g344">r941_prom_high_g344</option>
69 <option value="r941_prom_high_g360" selected="true">r941_prom_high_g360</option> 69 <option value="r941_prom_high_g360">r941_prom_high_g360</option>
70 <option value="r941_prom_high_g4011">r941_prom_high_g4011</option>
70 <option value="r941_prom_snp_g303">r941_prom_snp_g303</option> 71 <option value="r941_prom_snp_g303">r941_prom_snp_g303</option>
71 <option value="r941_prom_snp_g322">r941_prom_snp_g322</option> 72 <option value="r941_prom_snp_g322">r941_prom_snp_g322</option>
73 <option value="r941_prom_snp_g360">r941_prom_snp_g360</option>
72 <option value="r941_prom_variant_g303">r941_prom_variant_g303</option> 74 <option value="r941_prom_variant_g303">r941_prom_variant_g303</option>
73 <option value="r941_prom_variant_g322">r941_prom_variant_g322</option> 75 <option value="r941_prom_variant_g322">r941_prom_variant_g322</option>
76 <option value="r941_prom_variant_g360">r941_prom_variant_g360</option>
74 </param> 77 </param>
75 </xml> 78 </xml>
76 <xml name="reference"> 79 <xml name="reference">
77 <conditional name="reference_source"> 80 <conditional name="reference_source">
78 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> 81 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">