Mercurial > repos > iuc > medaka_variant_pipeline

comparison macros.xml @ 1:92cdc29a8620 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e5b495e8ace37eaf31a3430a29de11c83416dc2c"
author iuc
date Thu, 28 May 2020 02:39:16 -0400
parents 711d4deb7bdf
children ce2bf68a260d
comparison
equal deleted inserted replaced
0:711d4deb7bdf 1:92cdc29a8620
20 urldate = {2020-05-06} 20 urldate = {2020-05-06}
21 }</citation> 21 }</citation>
22 </citations> 22 </citations>
23 </xml> 23 </xml>
24 24
25 <!-- 25 <!--
26 command 26 command
27 --> 27 -->
28 28
29 <token name="@REF_FASTA@"><![CDATA[ 29 <token name="@REF_FASTA@"><![CDATA[
30 #if $reference_source.reference_source_selector == 'history': 30 #if $reference_source.reference_source_selector == 'history':
31 ln -f -s '$reference_source.ref_file' 'reference.fa' && 31 ln -f -s '$reference_source.ref_file' reference.fa &&
32 #else: 32 #else:
33 ln -f -s '$reference_source.ref_file.fields.path' 'reference.fa' && 33 ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
34 #end if 34 #end if
35 ]]></token> 35 ]]></token>
36 36
37 <!-- 37 <!--
38 input 38 input
39 --> 39 -->
40 40
41 <xml name="b" token_argument="-b"> 41 <xml name="b" token_argument="-b">
42 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> 42 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/>
43 </xml> 43 </xml>