Mercurial > repos > iuc > medaka_variant_pipeline

diff medaka_variant.xml @ 3:148f32860445 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
author iuc
date Tue, 01 Sep 2020 03:06:38 -0400
parents ce2bf68a260d
children 5c959a2dde5f
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--- a/medaka_variant.xml	Thu Jun 18 05:08:40 2020 -0400
+++ b/medaka_variant.xml	Tue Sep 01 03:06:38 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="medaka_variant_pipeline" name="medaka: Variant pipeline" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="medaka_variant_pipeline" name="medaka: Variant pipeline" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>via neural networks</description>
     <macros>
         <import>macros.xml</import>
@@ -32,7 +32,7 @@
 -i alignment.bam
 -f reference.fa
 
-|& tee '$out_log'
+2>&1 | tee '$out_log'
     ]]></command>
     <inputs>
         <param argument="-i" type="data" format="bam" label="Select input reads" help="Read groups are currently ignored, so the bam should only contain reads from a single sample."/>