Mercurial > repos > iuc > medaka_variant_pipeline
diff test-data/annotated.vcf @ 3:148f32860445 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
| author | iuc |
|---|---|
| date | Tue, 01 Sep 2020 03:06:38 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annotated.vcf Tue Sep 01 03:06:38 2020 -0400 @@ -0,0 +1,16 @@ +##fileformat=VCFv4.1 +##medaka_version=1.0.3 +##contig=<ID=NC_045512.2> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype."> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score"> +##annotateVCFVersion=0.1 +##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth"> +##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency"> +##INFO=<ID=FAF,Number=1,Type=Float,Description="Forward Allele Frequency"> +##INFO=<ID=RAF,Number=1,Type=Float,Description="Reverse Allele Frequency"> +##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position"> +##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE +NC_045512.2 45 . G C 46.359 PASS DP=31;AF=0.900000;FAF=0.937500;RAF=0.857143;SB=6;DP4=0,2,15,12 GT:GQ 1:46 +NC_045512.2 685 . AAAGTCATTT A 260.487 PASS DP=75;AF=0.880000;FAF=0.789474;RAF=0.972973;SB=0;DP4=0,0,30,36 GT:GQ 1:260 +NC_045512.2 1813 . TA T 11.034 PASS DP=51;AF=0.607843;FAF=0.521739;RAF=0.678571;SB=0;DP4=0,0,12,19 GT:GQ 1:11