Mercurial > repos > iuc > medaka_variant_pipeline
view test-data/annotated.vcf @ 5:efca385ce679 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 13769e7d51b30a1d15eb62a9ba89ee2064f3ddc3"
| author | iuc |
|---|---|
| date | Fri, 16 Oct 2020 17:05:01 +0000 |
| parents | 148f32860445 |
| children |
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##fileformat=VCFv4.1 ##medaka_version=1.0.3 ##contig=<ID=NC_045512.2> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype."> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score"> ##annotateVCFVersion=0.1 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth"> ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency"> ##INFO=<ID=FAF,Number=1,Type=Float,Description="Forward Allele Frequency"> ##INFO=<ID=RAF,Number=1,Type=Float,Description="Reverse Allele Frequency"> ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position"> ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE NC_045512.2 45 . G C 46.359 PASS DP=31;AF=0.900000;FAF=0.937500;RAF=0.857143;SB=6;DP4=0,2,15,12 GT:GQ 1:46 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS DP=75;AF=0.880000;FAF=0.789474;RAF=0.972973;SB=0;DP4=0,0,30,36 GT:GQ 1:260 NC_045512.2 1813 . TA T 11.034 PASS DP=51;AF=0.607843;FAF=0.521739;RAF=0.678571;SB=0;DP4=0,0,12,19 GT:GQ 1:11