Mercurial > repos > iuc > megan_blast2lca

comparison macros.xml @ 2:07d36bc47eaf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 374a2824a264468316f04281ed211079015503b5"
author iuc
date Tue, 07 Dec 2021 10:18:20 +0000
parents 1930eb870dca
children a80281b0172e
comparison
equal deleted inserted replaced
1:1930eb870dca 2:07d36bc47eaf
36 <param name="blast1" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for forward read"/> 36 <param name="blast1" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for forward read"/>
37 <param name="blast2" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for reverse read"/> 37 <param name="blast2" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for reverse read"/>
38 </when> 38 </when>
39 </conditional> 39 </conditional>
40 </macro> 40 </macro>
41 <macro name="input_daa_param">
42 <param argument="--in" type="data" format="daa" label="Input DAA file"/>
43 </macro>
41 <macro name="long_reads_param"> 44 <macro name="long_reads_param">
42 <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/> 45 <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/>
46 </macro>
47 <macro name="max_matches_per_read_param">
48 <param argument="--maxMatchesPerRead" type="integer" value="100" label="Maximum matches per read"/>
49 </macro>
50 <macro name="only_named_classifications_param">
51 <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications">
52 <sanitizer>
53 <valid initial="@VALIDINITIAL@">
54 <remove value="&apos;" />
55 <add value="|" />
56 </valid>
57 <mapping initial="none">
58 <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
59 </mapping>
60 </sanitizer>
61 </param>
43 </macro> 62 </macro>
44 <macro name="classification_options"> 63 <macro name="classification_options">
45 <option value="EC" selected="true">EC</option> 64 <option value="EC" selected="true">EC</option>
46 <option value="EGGNOG">EGGNOG</option> 65 <option value="EGGNOG">EGGNOG</option>
47 <option value="GTDB">GTDB</option> 66 <option value="GTDB">GTDB</option>
100 <add value="|" /> 119 <add value="|" />
101 </valid> 120 </valid>
102 <mapping initial="none"> 121 <mapping initial="none">
103 <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" /> 122 <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
104 </mapping> 123 </mapping>
105 </sanitizer> 124 </sanitizer>
106 </xml> 125 </xml>
107 <xml name="citations"> 126 <xml name="citations">
108 <citations> 127 <citations>
109 <citation type="doi">10.1038/nmeth.3176</citation> 128 <citation type="doi">10.1038/nmeth.3176</citation>
110 <citation type="doi">10.1101/gr.120618.111</citation> 129 <citation type="doi">10.1101/gr.120618.111</citation>