Mercurial > repos > iuc > megan_blast2rma

comparison blast2rma.xml @ 3:d326b943f5e2 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 5386f7bb4bf5bdd4b5303d0686c97fe5d9b99ca0"
author iuc
date Sat, 11 Dec 2021 11:51:54 +0000
parents 5be253dd3e08
children 45fd617493eb
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2:5be253dd3e08 3:d326b943f5e2
128 </param> 128 </param>
129 <section name="advanced_options" title="Advanced options" expanded="false"> 129 <section name="advanced_options" title="Advanced options" expanded="false">
130 <expand macro="long_reads_param"/> 130 <expand macro="long_reads_param"/>
131 <expand macro="max_matches_per_read_param"/> 131 <expand macro="max_matches_per_read_param"/>
132 <expand macro="classify_param"/> 132 <expand macro="classify_param"/>
133 <expand macro="blast_params"/> 133 <expand macro="min_score_param"/>
134 <expand macro="max_expected_param"/>
135 <expand macro="min_percent_identity_param"/>
136 <expand macro="top_percent_param"/>
134 <expand macro="min_max_params"/> 137 <expand macro="min_max_params"/>
135 <expand macro="lca_params"/> 138 <expand macro="lca_params"/>
136 <expand macro="read_assignment_mode_param"/> 139 <expand macro="read_assignment_mode_param"/>
137 <expand macro="con_file_param"/> 140 <expand macro="con_file_param"/>
138 </section> 141 </section>
198 </test> 201 </test>
199 </tests> 202 </tests>
200 <help> 203 <help>
201 **What it does** 204 **What it does**
202 205
203 Computes MEGAN RMA files from BLAST (or similar) files. Inputs consist of reads in fasta or fasqsanger format (gzip compressin 206 Generates MEGAN RMA files from BLAST (or similar) files. Inputs consist of reads in fasta or fasqsanger format (gzip compression
204 is supported) and associated Blast files. Each read file should have been used previously as the Blast input to produce the 207 is supported) and associated Blast files. Each read file should have been used previously as the Blast input to produce the
205 associated Blast file for this tool. 208 associated Blast file for this tool.
206 209
207 This wrapper supports the following formats for the input Blast file. The SAM, Tabular and Text formats can be produced by 210 This wrapper supports the following formats for the input Blast file. The SAM, Tabular and Text formats can be produced by
208 The Galaxy MALT Analyzer tool. When these formats are used, this tool will apply the SAM, BlastText and BlastTab format options 211 The Galaxy MALT Analyzer tool. When these formats are used, this tool will apply the SAM, BlastText and BlastTab format options