Mercurial > repos > iuc > megan_daa2rma

diff daa2rma.xml @ 1:10360f9989ee draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 5386f7bb4bf5bdd4b5303d0686c97fe5d9b99ca0"
author iuc
date Sat, 11 Dec 2021 11:51:34 +0000
parents e13ac00e6a4d
children 8a9cad43dcde
line wrap: on
line diff
--- a/daa2rma.xml	Tue Dec 07 10:16:58 2021 +0000
+++ b/daa2rma.xml	Sat Dec 11 11:51:34 2021 +0000
@@ -63,7 +63,10 @@
             <expand macro="long_reads_param"/>
             <expand macro="max_matches_per_read_param"/>
             <expand macro="classify_param"/>
-            <expand macro="blast_params"/>
+            <expand macro="min_score_param"/>
+            <expand macro="max_expected_param"/>
+            <expand macro="min_percent_identity_param"/>
+            <expand macro="top_percent_param"/>
             <expand macro="min_max_params"/>
             <expand macro="lca_params"/>
             <expand macro="read_assignment_mode_param"/>
@@ -76,7 +79,7 @@
         <data name="output" format="rma6"/>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="in" ftype="daa" value="input.daa"/>
             <output name="output" ftype="rma6">
                 <assert_contents>
@@ -84,7 +87,7 @@
                 </assert_contents>
             </output>
        </test>
-        <test>
+        <test expect_num_outputs="1">
             <param name="in" ftype="daa" value="input.daa"/>
             <param name="longReads" value="true"/>
             <param name="minScore" value="25.0"/>
@@ -100,7 +103,7 @@
     <help>
 **What it does**
 
-Computes a MEGAN RMA (RealMedia Audio) file from a DIOMAND DAA file, a proprietary file format developed by PowerISO Computing
+Generates a MEGAN RMA (RealMedia Audio) file from a DIAMOND DAA file, a proprietary file format developed by PowerISO Computing
 for disk image files.  MEGAN uses an update of the original RMA file format known as RMA6.
     </help>
     <expand macro="citations"/>