comparison sam2rma.xml @ 1:ef0443c0eaba draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 6b0c3dbd5bdf9c272cf32f39e0004d504f953ff0
author iuc
date Sat, 27 Aug 2022 17:07:04 +0000
parents 4f0a8e401e2e
children
comparison
equal deleted inserted replaced
0:4f0a8e401e2e 1:ef0443c0eaba
188 <test expect_num_outputs="1"> 188 <test expect_num_outputs="1">
189 <param name="sam1" ftype="sam" value="input1.sam"/> 189 <param name="sam1" ftype="sam" value="input1.sam"/>
190 <param name="read1" ftype="fastqsanger.gz" value="13-1941-6_S4_L001_R1_600000.fastq.gz"/> 190 <param name="read1" ftype="fastqsanger.gz" value="13-1941-6_S4_L001_R1_600000.fastq.gz"/>
191 <output name="output_single" ftype="rma6"> 191 <output name="output_single" ftype="rma6">
192 <assert_contents> 192 <assert_contents>
193 <has_size value="885"/> 193 <has_size value="885" delta="15"/>
194 </assert_contents> 194 </assert_contents>
195 </output> 195 </output>
196 </test> 196 </test>
197 <!-- Dataset pair input --> 197 <!-- Dataset pair input -->
198 <test expect_num_outputs="2"> 198 <test expect_num_outputs="2">
201 <param name="sam1" value="input1.sam" ftype="sam"/> 201 <param name="sam1" value="input1.sam" ftype="sam"/>
202 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/> 202 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/>
203 <param name="sam2" value="input2.sam" ftype="sam"/> 203 <param name="sam2" value="input2.sam" ftype="sam"/>
204 <output name="output_forward" ftype="rma6"> 204 <output name="output_forward" ftype="rma6">
205 <assert_contents> 205 <assert_contents>
206 <has_size value="805"/> 206 <has_size value="805" delta="1"/>
207 </assert_contents> 207 </assert_contents>
208 </output> 208 </output>
209 <output name="output_reverse" ftype="rma6"> 209 <output name="output_reverse" ftype="rma6">
210 <assert_contents> 210 <assert_contents>
211 <has_size value="805"/> 211 <has_size value="805" delta="1"/>
212 </assert_contents> 212 </assert_contents>
213 </output> 213 </output>
214 </test> 214 </test>
215 <!-- List of dataset pairs input --> 215 <!-- List of dataset pairs input -->
216 <test expect_num_outputs="2"> 216 <test expect_num_outputs="2">
223 </param> 223 </param>
224 <param name="sam1" value="input1.sam" ftype="sam"/> 224 <param name="sam1" value="input1.sam" ftype="sam"/>
225 <param name="sam2" value="input2.sam" ftype="sam"/> 225 <param name="sam2" value="input2.sam" ftype="sam"/>
226 <output name="output_forward" ftype="rma6"> 226 <output name="output_forward" ftype="rma6">
227 <assert_contents> 227 <assert_contents>
228 <has_size value="805"/> 228 <has_size value="805" delta="1"/>
229 </assert_contents> 229 </assert_contents>
230 </output> 230 </output>
231 <output name="output_reverse" ftype="rma6"> 231 <output name="output_reverse" ftype="rma6">
232 <assert_contents> 232 <assert_contents>
233 <has_size value="805"/> 233 <has_size value="805" delta="1"/>
234 </assert_contents> 234 </assert_contents>
235 </output> 235 </output>
236 </test> 236 </test>
237 </tests> 237 </tests>
238 <help> 238 <help>