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comparison meme_chip.xml @ 1:091a9d638d78 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme_chip commit 0ba5f658424430eea10c79f92c9a8d7a1ca9eaf3
author iuc
date Thu, 15 Nov 2018 09:58:25 -0500
parents 6095db402811
children d5363e336890
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0:6095db402811 1:091a9d638d78
1 <tool id="meme_chip" name="MEME-ChIP" version="4.11.2"> 1 <tool id="meme_chip" name="MEME-ChIP" version="@WRAPPER_VERSION@+galaxy1">
2 <description>- motif discovery, enrichment analysis and clustering on large nucleotide datasets</description> 2 <description>- motif discovery, enrichment analysis and clustering on large nucleotide datasets</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
79 -dreme-e $options_type_cond.dreme_e 79 -dreme-e $options_type_cond.dreme_e
80 -dreme-m $options_type_cond.dreme_m 80 -dreme-m $options_type_cond.dreme_m
81 -spamo-skip 81 -spamo-skip
82 -fimo-skip 82 -fimo-skip
83 #end if 83 #end if
84 && rm '$output' 84 && mv $primary_output '$output'
85 && ln -s $primary_output '$output'
86 ]]></command> 85 ]]></command>
87 <inputs> 86 <inputs>
88 <param name="input" type="data" format="fasta" label="Primary sequences" help="Nucleotide sequences must have equal length"/> 87 <param name="input" type="data" format="fasta" label="Primary sequences" help="Nucleotide sequences must have equal length"/>
89 <param name="control" type="data" format="fasta" optional="true" label="Control sequences" help="If no selection, positive sequences in the input are shuffled to create the negative set"/> 88 <param name="control" type="data" format="fasta" optional="true" label="Control sequences" help="If no selection, positive sequences in the input are shuffled to create the negative set"/>
90 <param name="sequence_alphabet" type="select" label="Sequence alphabet"> 89 <param name="sequence_alphabet" type="select" label="Sequence alphabet">