Mercurial > repos > iuc > meme_dreme

comparison dreme.xml @ 2:3e5c80594237 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:04:55 -0500
parents cb8a2242bf03
children ec2f378ac827
comparison
equal deleted inserted replaced
1:cb8a2242bf03 2:3e5c80594237
99 <test> 99 <test>
100 <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/> 100 <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
101 <param name="alphabet_type" value="-rna"/> 101 <param name="alphabet_type" value="-rna"/>
102 <param name="norc" value="false"/> 102 <param name="norc" value="false"/>
103 <param name="non_commercial_use" value="True"/> 103 <param name="non_commercial_use" value="True"/>
104 <output name="html_outfile" file="dreme_output_test1.html" lines_diff="22"/> 104 <output name="html_outfile" file="dreme_output_test1.html" compare="contains"/>
105 <output name="txt_outfile" file="dreme_output_test1.txt" lines_diff="22"/> 105 <output name="txt_outfile" file="dreme_output_test1.txt" compare="contains"/>
106 <output name="xml_outfile" file="dreme_output_test1.xml" lines_diff="22"/> 106 <output name="xml_outfile" file="dreme_output_test1.xml" compare="contains"/>
107 </test> 107 </test>
108 <test> 108 <test>
109 <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/> 109 <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
110 <param name="alphabet_type" value="-rna"/> 110 <param name="alphabet_type" value="-rna"/>
111 <param name="norc" value="false"/> 111 <param name="norc" value="false"/>
112 <param name="options_type_selector" value="advanced"/> 112 <param name="options_type_selector" value="advanced"/>
113 <param name="e_value_thr" value="0.00001"/> 113 <param name="e_value_thr" value="0.00001"/>
114 <param name="motif_min_k" value="4"/> 114 <param name="motif_min_k" value="4"/>
115 <param name="motif_max_k" value="10"/> 115 <param name="motif_max_k" value="10"/>
116 <param name="non_commercial_use" value="True"/> 116 <param name="non_commercial_use" value="True"/>
117 <output name="html_outfile" file="dreme_output_test2.html" lines_diff="22"/> 117 <output name="html_outfile" file="dreme_output_test2.html" compare="contains"/>
118 <output name="txt_outfile" file="dreme_output_test2.txt" lines_diff="22"/> 118 <output name="txt_outfile" file="dreme_output_test2.txt" compare="contains"/>
119 <output name="xml_outfile" file="dreme_output_test2.xml" lines_diff="22"/> 119 <output name="xml_outfile" file="dreme_output_test2.xml" compare="contains"/>
120 </test> 120 </test>
121 </tests> 121 </tests>
122 <help><![CDATA[ 122 <help><![CDATA[
123 DREME (Discriminative Regular Expression Motif Elicitation) discovers short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in your sequences compared with shuffled sequences or given control sequences. 123 DREME (Discriminative Regular Expression Motif Elicitation) discovers short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in your sequences compared with shuffled sequences or given control sequences.
124 124