comparison test-data/dreme1.xml @ 0:b386032d758d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author iuc
date Wed, 25 Apr 2018 12:13:22 -0400
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comparison
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-1:000000000000 0:b386032d758d
1 <dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700">
2 <model>
3 <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line>
4 <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" />
5 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/>
6 <alphabet name="RNA" like="rna">
7 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/>
8 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/>
9 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/>
10 <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/>
11 <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/>
12 <letter id="V" symbol="V" equals="ACG" name="Not U"/>
13 <letter id="H" symbol="H" equals="ACU" name="Not G"/>
14 <letter id="D" symbol="D" equals="AGU" name="Not C"/>
15 <letter id="B" symbol="B" equals="CGU" name="Not A"/>
16 <letter id="M" symbol="M" equals="AC" name="Amino"/>
17 <letter id="R" symbol="R" equals="AG" name="Purine"/>
18 <letter id="W" symbol="W" equals="AU" name="Weak"/>
19 <letter id="S" symbol="S" equals="CG" name="Strong"/>
20 <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/>
21 <letter id="K" symbol="K" equals="GU" name="Keto"/>
22 </alphabet>
23 <strands>none</strands>
24 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/>
25 <stop evalue="0"/>
26 <ngen>100</ngen>
27 <add_pv_thresh>0.01</add_pv_thresh>
28 <seed>1</seed>
29 <host>ThinkPad-T450s</host>
30 <when>Thu Apr 19 19:40:08 CEST 2018</when>
31 </model>
32 <motifs>