Mercurial > repos > iuc > meme_dreme
comparison test-data/dreme1.xml @ 0:b386032d758d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
| author | iuc |
|---|---|
| date | Wed, 25 Apr 2018 12:13:22 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:b386032d758d |
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| 1 <dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> | |
| 2 <model> | |
| 3 <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line> | |
| 4 <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" /> | |
| 5 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> | |
| 6 <alphabet name="RNA" like="rna"> | |
| 7 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> | |
| 8 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> | |
| 9 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> | |
| 10 <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/> | |
| 11 <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/> | |
| 12 <letter id="V" symbol="V" equals="ACG" name="Not U"/> | |
| 13 <letter id="H" symbol="H" equals="ACU" name="Not G"/> | |
| 14 <letter id="D" symbol="D" equals="AGU" name="Not C"/> | |
| 15 <letter id="B" symbol="B" equals="CGU" name="Not A"/> | |
| 16 <letter id="M" symbol="M" equals="AC" name="Amino"/> | |
| 17 <letter id="R" symbol="R" equals="AG" name="Purine"/> | |
| 18 <letter id="W" symbol="W" equals="AU" name="Weak"/> | |
| 19 <letter id="S" symbol="S" equals="CG" name="Strong"/> | |
| 20 <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/> | |
| 21 <letter id="K" symbol="K" equals="GU" name="Keto"/> | |
| 22 </alphabet> | |
| 23 <strands>none</strands> | |
| 24 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> | |
| 25 <stop evalue="0"/> | |
| 26 <ngen>100</ngen> | |
| 27 <add_pv_thresh>0.01</add_pv_thresh> | |
| 28 <seed>1</seed> | |
| 29 <host>ThinkPad-T450s</host> | |
| 30 <when>Thu Apr 19 19:40:08 CEST 2018</when> | |
| 31 </model> | |
| 32 <motifs> |