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comparison test-data/fimo_output_test1.html @ 6:fd05b142b3a3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:19:55 +0000
parents f33d77dcacce
children
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5:f33d77dcacce 6:fd05b142b3a3
1 <td style="padding-right: 2em">background file name = --nrdb--</td>
2 <td style="padding-left: 5em; padding-right: 2em">alphabet = DNA</td>
3 <td style="padding-left: 5em; padding-right: 2em">max stored scores = 100000</td>
4 </tr> <tr>
5 <td style="padding-right: 2em">allow clobber = false</td>
6 <td style="padding-left: 5em; padding-right: 2em">compute q-values = true</td>
7 <td style="padding-left: 5em; padding-right: 2em">parse genomic coord. = false</td>
8 </tr>
9 <tr>
10 <td style="padding-right: 2em">text only = false</td>
11 <td style="padding-left: 5em; padding-right: 2em">scan both strands = true</td>
12 <td style="padding-left: 5em; padding-right: 2em">max strand = false</td>
13 </tr>
14 <tr>
15 <td style="padding-right: 2em">threshold type = p-value</td>
16 <td style="padding-left: 5em; padding-right: 2em">output theshold = 0.0001</td>
17 <td style="padding-left: 5em; padding-right: 2em">pseudocount = 0.1</td>
18 </tr>
19 <tr>
20 <td style="padding-right: 2em">alpha = 1</td>
21 <td style="padding-left: 5em; padding-right: 2em">verbosity = 2</td>
22 <td style="padding-left: 5em; padding-right: 2em"></td>
23 </tr>
24
25 </table>
26 </pre>
27 <p>
28 This information can be useful in the event you wish to report a
29 problem with the FIMO software.
30 </p>
31 <hr>
32 <span style="background-color: #DDDDFF"><a href="#top_buttons"><b>Go to top</b></a></span>
33 </body>
34 </html>