Mercurial > repos > iuc > meme_fimo

comparison test-data/fimo_output_test3.xml @ 15:0c5239d1aa65 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:05:35 -0500
parents 4eb02864e5df
children c5209f38700d
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14:c1a9a297ba8b 15:0c5239d1aa65
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <!-- Begin document body --> 2 <!-- Begin document body -->
3 <fimo version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> 3 <fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo" 5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
6 > 6 >
7 <command-line>fimo -o ./fimo_test4_out --thresh 0.01 --bgfile --uniform-- --max-stored-scores 100000 --motif ACTAAYH --motif-pseudo 0.1 dreme_fimo_input_1.xml hsa_chrM.fa</command-line>
8 <settings> 7 <settings>
9 <setting name="output directory">./fimo_test4_out</setting>
10 <setting name="MEME file name">dreme_fimo_input_1.xml</setting>
11 <setting name="sequence file name">hsa_chrM.fa</setting>
12 <setting name="background file name">--uniform--</setting> 8 <setting name="background file name">--uniform--</setting>
13 <setting name="allow clobber">false</setting> 9 <setting name="allow clobber">false</setting>
14 <setting name="compute q-values">true</setting> 10 <setting name="compute q-values">true</setting>
15 <setting name="parse genomic coord.">false</setting> 11 <setting name="parse genomic coord.">false</setting>
16 <setting name="text only">false</setting> 12 <setting name="text only">false</setting>