Mercurial > repos > iuc > meme_fimo

comparison test-data/meme_output_test2.html @ 18:c5209f38700d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:32:23 +0000
parents 0c5239d1aa65
children
comparison
equal deleted inserted replaced
17:d7a6ea1e3b9d 18:c5209f38700d
1 <!DOCTYPE HTML> 1 <script>
2 <html> 2 {
3 <head> 3 $("opt_mod").className = data.options.mod;
4 <meta charset="UTF-8"> 4 $("opt_objfun").textContent = data.options.objfun;
5 <title>MEME</title> 5 $("opt_spfun").textContent = data.options.spfun;
6 <script> 6 $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none");
7 // @JSON_VAR data 7 $("opt_nmotifs").textContent = data.options.nmotifs;
8 var data = { 8 $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit");
9 "program": "MEME", 9 $("opt_minw").textContent = data.options.minw;
10 "version": "5.0.5", 10 $("opt_maxw").textContent = data.options.maxw;
11 "release": "Mon Mar 18 20:12:19 2019 -0700", 11 $("opt_minsites").textContent = data.options.minsites;
12 "stop_reason": "Stopped because requested number of motifs (1) found.", 12 $("opt_maxsites").textContent = data.options.maxsites;
13 "cmd": [ 13 $("opt_wnsites").textContent = data.options.wnsites;
14 "meme", 14 $("opt_spmap").className = data.options.spmap;
15 "-o", 15 $("opt_spfuzz").textContent = data.options.spfuzz;
16 "-nostatus", "-maxsize", "1000000", "-sf", "Galaxy_FASTA_Input", 16 $("opt_prior").className = data.options.prior;
17 "-dna", "-mod", "zoops", "-nmotifs", "1", "-wnsites", "0.8", 17 if (data.options.prior == "dirichlet") {
18 "-minw", "8", "-maxw", "50", "-wg", "11", "-ws", "1", "-maxiter", 18 $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true);
19 "50", "-distance", "0.001", "-prior", "dirichlet", "-b", "0.01", 19 } else {
20 "-plib", 20 $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source;
21 "-spmap", "uni", "-spfuzz", "0.5" 21 }
22 ], 22 $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b;
23 "motifs": [ 23 $("opt_maxiter").textContent = data.options.maxiter;
24 ] 24 $("opt_distance").textContent = data.options.distance;
25 }; 25 $("opt_searchsize").textContent = data.options.searchsize;
26 </script> 26 if (typeof data.options.csites != "undefined") {
27 var site_url = "http://meme-suite.org"; 27 $("opt_csites").textContent = data.options.csites;
28 } else {
29 $("opt_csites").parentElement.style.display = "none"
30 }
31 if (typeof data.options.wg != "undefined") {
32 $("opt_wg").textContent = data.options.wg;
33 } else {
34 $("opt_wg").parentElement.style.display = "none"
35 }
36 if (typeof data.options.ws != "undefined") {
37 $("opt_ws").textContent = data.options.ws;
38 }
39 else {
40 $("opt_ws").parentElement.style.display = "none"
41 }
42 if (typeof data.options.noendgaps != "undefined") {
43 $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off");
44 }
45 else {
46 $("opt_noendgaps").parentElement.style.display = "none"
47 }
48 $("opt_substring").className = (data.options.substring ? "on" : "off");
49 }
50 </script>
51 </div>
52 <!-- list information on this program -->
53 <div id="info_sec" class="bar">
54 <div class="subsection">
55 <h5 id="version">MEME version</h5>
56 <span id="ins_version"></span>
57 (Release date: <span id="ins_release"></span>)<br>
58 </div>
59 <script>
60 $("ins_version").innerHTML = data["version"];
61 $("ins_release").innerHTML = data["release"];
62 </script>
63 <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div>
64 <div class="subsection">
65 <h5 id="command">Command line</h5>
66 <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly">
67 </textarea>
68 <script>$("cmd").value = data["cmd"].join(" ");</script>
69 </div>
70 </div>
71
72 </body>
73 </html>