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comparison test-data/dreme_output_test1.html @ 19:01f5d04846c4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:19:40 +0000
parents c5209f38700d
children
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18:c5209f38700d 19:01f5d04846c4
1 </div>
2 <div class="box">
3 <h4>Sequences</h4>
4 <table id="seq_info" class="inputs">
5 <tr><th>Source <div class="help" data-topic="pop_seq_source"></div></th>
6 <th>Alphabet <div class="help" data-topic="pop_seq_alph"></div></th>
7 <th>Sequence Count <div class="help" data-topic="pop_seq_count"></div></th>
8 </tr>
9 <tr>
10 <td id="ins_seq_source"></td>
11 <td id="ins_seq_alphabet"></td>
12 <td id="ins_seq_count"></td>
13 </tr>
14 </table>
15 <script>
16 {
17 var db = data.sequence_db;
18 $("ins_seq_source").innerHTML = db.file;
19 $("ins_seq_alphabet").innerHTML = current_alphabet.get_alphabet_name();
20 $("ins_seq_count").innerHTML = db.count;
21 }
22 </script>
23 <h4>Control Sequences</h4>
24 <table id="seq_info" class="inputs">
25 <tr><th>Source <div class="help" data-topic="pop_seq_source"></div></th>
26 <th>Sequence Count <div class="help" data-topic="pop_seq_count"></div></th>
27 </tr>
28 <tr>
29 <td id="ins_cseq_source"></td>
30 <td id="ins_cseq_count"></td>
31 </tr>
32 </table>
33 <script>
34 {
35 var db = data.control_db;
36 if (db.from == "shuffled") {
37 $("ins_cseq_source").innerHTML = "Shuffled Sequences";
38 } else {
39 $("ins_cseq_source").innerHTML = db.file;
40 }
41 $("ins_cseq_count").innerHTML = db.count;
42 }
43 </script>
44 <h4>Background</h4>
45 <span id="alpha_bg"></span>
46 <script>
47 {
48 $("alpha_bg").appendChild(make_alpha_bg_table(current_alphabet, data.control_db.freqs));
49 }
50 </script>
51 <h4>Other Settings</h4>
52 <table id="tbl_settings" class="inputs hide_advanced">
53 <tr>
54 <th>Strand Handling</th>
55 <td id="opt_strand">
56 <span class="strand_none">This alphabet only has one strand</span>
57 <span class="strand_given">Only the given strand is processed</span>
58 <span class="strand_both">Both the given and reverse complement strands are processed</span>
59 </td>
60 </tr>
61 <tr><th># REs to Generalize</th><td id="opt_ngen"></td></tr>
62 <tr><th>Shuffle Seed</th><td id="opt_seed"></td></tr>
63 <tr><th>E-value Threshold</th><td id="opt_stop_evalue"></td></tr>
64 <tr><th>Max Motif Count</th><td id="opt_stop_count"></td></tr>
65 <tr><th>Max Run Time</th><td id="opt_stop_time"></td></tr>
66 </table>
67 <script>
68 {
69 $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none");
70 $("opt_ngen").innerHTML = data.options.ngen;
71 $("opt_seed").innerHTML = data.options.seed;
72 $("opt_stop_evalue").innerHTML = data.options.stop.evalue;
73 $("opt_stop_count").innerHTML = (typeof data.options.stop.count == "number" ? data.options.stop.count : "No maximum motif count.");
74 $("opt_stop_time").innerHTML = (typeof data.options.stop.time == "number" ? data.options.stop.time + " seconds." : "No maximum running time.");
75 }
76 </script>
77 </div>
78 <!-- list information on this program -->
79 <div id="info_sec" class="bar" style="position:relative">
80 <div style="position: absolute; right: 0;"><a href="#inputs_sec">Previous</a> <a href="#">Top</a></div>
81 <div class="subsection">
82 <h5 id="version">DREME version</h5>
83 <span id="ins_version"></span>
84 (Release date: <span id="ins_release"></span>)<br>
85 </div>
86 <script>
87 $("ins_version").innerHTML = data["version"];
88 $("ins_release").innerHTML = data["release"];
89 </script>
90 <div class="subsection" id="reference"> <script>print_citation("reference", "DREME");</script> </div>
91 <div class="subsection">
92 <h5 id="command">Command line</h5>
93 <textarea id="cmd" rows="3" style="width:100%;" readonly="readonly">
94 </textarea>
95 <script>$("cmd").value = data["cmd"].join(" ");</script>
96 </div>
97 </div>
98
99 </body>
100 </html>