Mercurial > repos > iuc > meme_fimo

diff fimo.xml @ 15:0c5239d1aa65 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:05:35 -0500
parents c1a9a297ba8b
children be146697a083
line wrap: on
line diff
--- a/fimo.xml	Wed Dec 12 02:50:48 2018 -0500
+++ b/fimo.xml	Wed Dec 11 18:05:35 2019 -0500
@@ -47,7 +47,7 @@
         '${fasta_type.input_database.fields.path}'
     #end if
 && mv ./out/fimo.html '${html_outfile}'
-&& mv ./out/fimo.txt '${txt_outfile}'
+&& mv ./out/fimo.tsv '${txt_outfile}'
 && mv ./out/fimo.xml '${xml_outfile}'
 && mv ./out/fimo.gff '${gff_outfile}'
     ]]></command>
@@ -235,10 +235,10 @@
             <param name="xml_outfile" value="True"/>
             <param name="gff_outfile" value="True"/>
             <param name="non_commercial_use" value="True"/>
-            <output name="html_outfile" file="fimo_output_test1.html" lines_diff="20"/>
-            <output name="txt_outfile" file="fimo_output_test1.txt"/>
-            <output name="xml_outfile" file="fimo_output_test1.xml" lines_diff="20"/>
-            <output name="gff_outfile" file="fimo_output_test1.gff"/>
+            <output name="html_outfile" file="fimo_output_test1.html" compare="contains"/>
+            <output name="txt_outfile" file="fimo_output_test1.txt" compare="contains"/>
+            <output name="xml_outfile" file="fimo_output_test1.xml" compare="contains"/>
+            <output name="gff_outfile" file="fimo_output_test1.gff" compare="contains"/>
         </test>
         <test expect_num_outputs="4">
             <param name="input_motifs" value="dreme_fimo_input_1.xml" ftype="memexml"/>
@@ -252,10 +252,10 @@
             <param name="xml_outfile" value="True"/>
             <param name="gff_outfile" value="True"/>
             <param name="non_commercial_use" value="True"/>
-            <output name="html_outfile" file="fimo_output_test2.html" lines_diff="20"/>
-            <output name="txt_outfile" file="fimo_output_test2.txt"/>
-            <output name="xml_outfile" file="fimo_output_test2.xml" lines_diff="20"/>
-            <output name="gff_outfile" file="fimo_output_test2.gff"/>
+            <output name="html_outfile" file="fimo_output_test2.html" compare="contains"/>
+            <output name="txt_outfile" file="fimo_output_test2.txt" compare="contains"/>
+            <output name="xml_outfile" file="fimo_output_test2.xml" compare="contains"/>
+            <output name="gff_outfile" file="fimo_output_test2.gff" compare="contains"/>
         </test>
         <test expect_num_outputs="3">
             <param name="input_motifs" value="dreme_fimo_input_1.xml" ftype="memexml"/>
@@ -273,9 +273,9 @@
             <param name="xml_outfile" value="True"/>
             <param name="gff_outfile" value="False"/>
             <param name="non_commercial_use" value="True"/>
-            <output name="html_outfile" file="fimo_output_test3.html" lines_diff="20"/>
-            <output name="txt_outfile" file="fimo_output_test3.txt"/>
-            <output name="xml_outfile" file="fimo_output_test3.xml" lines_diff="20"/>
+            <output name="html_outfile" file="fimo_output_test3.html" compare="contains"/>
+            <output name="txt_outfile" file="fimo_output_test3.txt" compare="contains"/>
+            <output name="xml_outfile" file="fimo_output_test3.xml" compare="contains"/>
         </test>
     </tests>
     <help>