--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fimo_output_txt_1.txt	Tue Dec 22 17:01:51 2015 -0500
@@ -0,0 +1,100 @@
+#pattern name	sequence name	start	stop	strand	score	p-value	q-value	matched sequence
+1	phiX174	1388	1398	+	29.4024	6.36e-11	1.25e-09	AATATCTATAA
+1	phiX174	847	857	+	29.122	7.02e-11	1.25e-09	AATGTCTAAAG
+1	phiX174	2301	2311	+	27.6463	1.08e-10	1.29e-09	AGGTTATAACG
+1	phiX174	5063	5073	+	25.5366	2.73e-10	2.25e-09	AGGAGCTAAAG
+1	phiX174	989	999	+	25.3049	3.15e-10	2.25e-09	TGAGGATAAAT
+1	phiX174	4713	4723	+	23.622	7.74e-10	3.48e-09	GACTGCTATCA
+1	phiX174	5048	5058	+	23.3293	8.51e-10	3.48e-09	TGCTGCTAAAG
+1	phiX174	855	865	+	23.3049	8.64e-10	3.48e-09	AAGGTAAAAAA
+1	phiX174	3155	3165	+	23.0366	9.76e-10	3.48e-09	TATGGCTAAAG
+1	phiX174	5009	5019	+	23.0366	9.76e-10	3.48e-09	TGTGGCTAAAT
+1	phiX174	814	824	+	22.5854	1.28e-09	4.14e-09	TGCGTCAAAAA
+1	phiX174	2832	2842	+	22.3415	1.42e-09	4.23e-09	TTGGTCTAACT
+1	phiX174	3830	3840	+	21.8293	1.7e-09	4.68e-09	TATTGATAAAG
+1	phiX174	3560	3570	+	21.5976	1.89e-09	4.82e-09	TGCGTCTATTA
+1	phiX174	2882	2892	+	21.1951	2.29e-09	5.46e-09	AGGTTATTAAA
+1	phiX174	4453	4463	+	20.8902	2.58e-09	5.75e-09	AAGGTATTAAG
+1	phiX174	2493	2503	+	20.3415	3.06e-09	5.79e-09	GACACCTAAAG
+1	phiX174	4104	4114	+	20.3171	3.08e-09	5.79e-09	GGCTTCCATAA
+1	phiX174	4955	4965	+	20.3171	3.08e-09	5.79e-09	TGATGCTAAAG
+1	phiX174	1885	1895	+	19.9268	3.61e-09	6.45e-09	TGCGACTAAAG
+1	phiX174	3376	3386	+	19.7683	3.81e-09	6.48e-09	AGAATCAAAAA
+1	phiX174	52	62	+	19.5732	4.06e-09	6.58e-09	TGAGTCGAAAA
+1	phiX174	1390	1400	+	19.378	4.26e-09	6.61e-09	TATCTATAACA
+1	phiX174	2017	2027	+	19.0854	4.6e-09	6.85e-09	TTCGTCTAAGA
+1	phiX174	1000	1010	+	18.878	4.88e-09	6.97e-09	TATGTCTAATA
+1	phiX174	1555	1565	+	18.439	5.58e-09	7.37e-09	GACTTCTACCA
+1	phiX174	4430	4440	+	18.4268	5.62e-09	7.37e-09	TGAGTATAATT
+1	phiX174	1927	1937	+	18.2927	5.82e-09	7.37e-09	GACTTATACCG
+1	phiX174	2981	2991	+	18.0732	6.13e-09	7.37e-09	CATGTCTAAAT
+1	phiX174	4203	4213	+	17.9268	6.34e-09	7.37e-09	GACGGCCATAA
+1	phiX174	1669	1679	+	17.8659	6.4e-09	7.37e-09	TGGAGGTAAAA
+1	phiX174	3260	3270	+	17.5	7.01e-09	7.82e-09	CGCTGATAAAG
+1	phiX174	3047	3057	+	17.2805	7.4e-09	7.85e-09	TACCGATAACA
+1	phiX174	4176	4186	+	17.1829	7.6e-09	7.85e-09	GAGTTCGATAA
+1	phiX174	4118	4128	+	17.1341	7.7e-09	7.85e-09	GATGGATAACC
+1	phiX174	5370	5380	+	16.9878	8.03e-09	7.87e-09	GGCGTATCCAA
+1	phiX174	1242	1252	+	16.5122	8.94e-09	7.87e-09	AGTGGATTAAG
+1	phiX174	2583	2593	+	16.5122	8.94e-09	7.87e-09	TACATCTGTCA
+1	phiX174	698	708	+	16.4146	9.13e-09	7.87e-09	TACGGAAAACA
+1	phiX174	2299	2309	+	16.3537	9.26e-09	7.87e-09	TGAGGTTATAA
+1	phiX174	4189	4199	+	16.1707	9.69e-09	7.87e-09	GTGATATGTAT
+1	phiX174	275	285	+	16.0976	9.85e-09	7.87e-09	GGTTTAGATAT
+1	phiX174	1801	1811	+	16.0366	1e-08	7.87e-09	GACCTATAAAC
+1	phiX174	1386	1396	+	15.9268	1.03e-08	7.87e-09	TGAATATCTAT
+1	phiX174	1303	1313	+	15.9024	1.03e-08	7.87e-09	TGGTTATATTG
+1	phiX174	3772	3782	+	15.878	1.04e-08	7.87e-09	AGGATATTTCT
+1	phiX174	1288	1298	+	15.8659	1.04e-08	7.87e-09	GACTGTTAACA
+1	phiX174	2577	2587	+	15.7683	1.08e-08	7.87e-09	GATGGATACAT
+1	phiX174	937	947	+	15.7561	1.08e-08	7.87e-09	TTGGTATGTAG
+1	phiX174	904	914	+	15.6585	1.11e-08	7.93e-09	AGGTACTAAAG
+1	phiX174	2279	2289	+	15.5854	1.13e-08	7.93e-09	TCGTGATAAAA
+1	phiX174	3164	3174	+	15.5	1.16e-08	7.98e-09	AGCTGGTAAAG
+1	phiX174	24	34	+	15.3293	1.23e-08	8.24e-09	AGAAGTTAACA
+1	phiX174	838	848	+	15.2561	1.27e-08	8.24e-09	GAGTGATGTAA
+1	phiX174	853	863	+	15.2561	1.27e-08	8.24e-09	TAAAGGTAAAA
+1	phiX174	1984	1994	+	15.0244	1.36e-08	8.68e-09	AATTTCTATGA
+1	phiX174	1	11	+	14.8293	1.46e-08	9.05e-09	GAGTTTTATCG
+1	phiX174	4307	4317	+	14.7927	1.47e-08	9.05e-09	TATTAATAACA
+1	phiX174	4303	4313	+	14.6585	1.52e-08	9.19e-09	TTGATATTAAT
+1	phiX174	5033	5043	+	14.561	1.58e-08	9.41e-09	GTCAGATATGG
+1	phiX174	2579	2589	+	14.2927	1.73e-08	1.01e-08	TGGATACATCT
+1	phiX174	322	332	+	14.1951	1.82e-08	1.05e-08	GACATTTTAAA
+1	phiX174	5001	5011	+	13.8902	2.09e-08	1.19e-08	GGTTTCTATGT
+1	phiX174	4217	4227	+	13.8171	2.15e-08	1.2e-08	TGCTTCTGACG
+1	phiX174	4262	4272	+	13.7805	2.18e-08	1.2e-08	AATGGATGAAT
+1	phiX174	3569	3579	+	13.7073	2.26e-08	1.22e-08	TATGGAAAACA
+1	phiX174	194	204	+	13.6829	2.29e-08	1.22e-08	ATCAACTAACG
+1	phiX174	131	141	+	13.4756	2.49e-08	1.31e-08	AAATGAGAAAA
+1	phiX174	1491	1501	+	13.4024	2.55e-08	1.32e-08	GCCATCTCAAA
+1	phiX174	434	444	+	13.2805	2.67e-08	1.36e-08	GGCCTCTATTA
+1	phiX174	4565	4575	+	13.2439	2.73e-08	1.36e-08	TTGGTTTATCG
+1	phiX174	102	112	+	13.2195	2.75e-08	1.36e-08	GAATTAAATCG
+1	phiX174	903	913	+	13.1463	2.82e-08	1.38e-08	GAGGTACTAAA
+1	phiX174	4748	4758	+	12.9756	3.01e-08	1.45e-08	TACAGCTAATG
+1	phiX174	2622	2632	+	12.8659	3.16e-08	1.5e-08	TGCTGATATTG
+1	phiX174	467	477	+	12.7317	3.35e-08	1.57e-08	TTTGGATTTAA
+1	phiX174	4033	4043	+	12.6829	3.44e-08	1.58e-08	AGCGTATCGAG
+1	phiX174	1348	1358	+	12.6707	3.46e-08	1.58e-08	TACCAATAAAA
+1	phiX174	239	249	+	12.5732	3.62e-08	1.64e-08	AGTGGCTTAAT
+1	phiX174	500	510	+	12.4634	3.84e-08	1.71e-08	GACGAGTAACA
+1	phiX174	3001	3011	+	12.4146	3.93e-08	1.73e-08	GCGGTCAAAAA
+1	phiX174	3776	3786	+	12.378	3.98e-08	1.73e-08	TATTTCTAATG
+1	phiX174	2026	2036	+	12.3293	4.06e-08	1.75e-08	GAAGTTTAAGA
+1	phiX174	4237	4247	+	12.3049	4.12e-08	1.75e-08	AGTTTGTATCT
+1	phiX174	803	813	+	12.2439	4.24e-08	1.78e-08	AGAAGAAAACG
+1	phiX174	3770	3780	+	12.1829	4.35e-08	1.81e-08	AAAGGATATTT
+1	phiX174	3429	3439	+	12.122	4.45e-08	1.82e-08	GAGATGCAAAA
+1	phiX174	99	109	+	12.1098	4.48e-08	1.82e-08	TACGAATTAAA
+1	phiX174	67	77	+	11.9268	4.78e-08	1.92e-08	TCTTGATAAAG
+1	phiX174	5332	5342	+	11.7195	5.13e-08	2.01e-08	ATCTGCTCAAA
+1	phiX174	277	287	+	11.7073	5.14e-08	2.01e-08	TTTAGATATGA
+1	phiX174	4338	4348	+	11.6951	5.18e-08	2.01e-08	GGGGACGAAAA
+1	phiX174	3812	3822	+	11.6585	5.28e-08	2.03e-08	GGTTGATATTT
+1	phiX174	1909	1919	+	11.5488	5.51e-08	2.08e-08	TAACGCTAAAG
+1	phiX174	3000	3010	+	11.5366	5.54e-08	2.08e-08	GGCGGTCAAAA
+1	phiX174	3891	3901	+	11.439	5.75e-08	2.11e-08	ATTGGCTCTAA
+1	phiX174	3079	3089	+	11.4268	5.76e-08	2.11e-08	CTGGTATTAAA
+1	phiX174	37	47	+	11.4146	5.79e-08	2.11e-08	TTCGGATATTT
+1	phiX174	380	390	+	11.3293	6.01e-08	2.17e-08	GTAAGAAATCA