Mercurial > repos > iuc > meme_fimo
diff test-data/dreme_output_test2.xml @ 18:c5209f38700d draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
| author | iuc |
|---|---|
| date | Sat, 09 Apr 2022 08:32:23 +0000 |
| parents | 0c5239d1aa65 |
| children |
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--- a/test-data/dreme_output_test2.xml Sat Nov 27 14:37:42 2021 +0000 +++ b/test-data/dreme_output_test2.xml Sat Apr 09 08:32:23 2022 +0000 @@ -1,30 +1,3 @@ -<dreme version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700"> - <model> - <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> - <alphabet name="RNA" like="rna"> - <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> - <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> - <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> - <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/> - <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/> - <letter id="V" symbol="V" equals="ACG" name="Not U"/> - <letter id="H" symbol="H" equals="ACU" name="Not G"/> - <letter id="D" symbol="D" equals="AGU" name="Not C"/> - <letter id="B" symbol="B" equals="CGU" name="Not A"/> - <letter id="M" symbol="M" equals="AC" name="Amino"/> - <letter id="R" symbol="R" equals="AG" name="Purine"/> - <letter id="W" symbol="W" equals="AU" name="Weak"/> - <letter id="S" symbol="S" equals="CG" name="Strong"/> - <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/> - <letter id="K" symbol="K" equals="GU" name="Keto"/> - </alphabet> - <strands>none</strands> - <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> - <stop evalue="1e-05"/> - <ngen>100</ngen> - <add_pv_thresh>0.01</add_pv_thresh> - <seed>1</seed> - </model> <motifs> <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="3.3e-013" unerased_evalue="3.3e-013"> <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> @@ -46,5 +19,4 @@ <match seq="CAGG" p="441" n="304" pvalue="1.5e-010" evalue="1.8e-005"/> <match seq="UAGG" p="232" n="165" pvalue="1.1e-004" evalue="1.3e+001"/> </motif> - </motifs> -</dreme> + </motifs> \ No newline at end of file