diff test-data/meme_output_test1.html @ 20:613c75eee7bd draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:56 +0000
parents c5209f38700d
children
line wrap: on
line diff
--- a/test-data/meme_output_test1.html	Thu Aug 29 10:19:40 2024 +0000
+++ b/test-data/meme_output_test1.html	Mon Jul 14 21:33:56 2025 +0000
@@ -1,73 +1,124 @@
-      <script>
-      {
-        $("opt_mod").className = data.options.mod;
-        $("opt_objfun").textContent = data.options.objfun;
-        $("opt_spfun").textContent = data.options.spfun;
-        $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none");
-        $("opt_nmotifs").textContent = data.options.nmotifs;
-        $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit");
-        $("opt_minw").textContent = data.options.minw;
-        $("opt_maxw").textContent = data.options.maxw;
-        $("opt_minsites").textContent = data.options.minsites;
-        $("opt_maxsites").textContent = data.options.maxsites;
-        $("opt_wnsites").textContent = data.options.wnsites;
-        $("opt_spmap").className = data.options.spmap;
-        $("opt_spfuzz").textContent = data.options.spfuzz;
-        $("opt_prior").className = data.options.prior;
-        if (data.options.prior == "dirichlet") {
-          $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true);
-        } else {
-          $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source;
-        }
-        $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b;
-        $("opt_maxiter").textContent = data.options.maxiter;
-        $("opt_distance").textContent = data.options.distance;
-        $("opt_searchsize").textContent = data.options.searchsize;
-        if (typeof data.options.csites != "undefined") {
-          $("opt_csites").textContent = data.options.csites;
-        } else {
-          $("opt_csites").parentElement.style.display = "none"
-        }
-        if (typeof data.options.wg != "undefined") {
-          $("opt_wg").textContent = data.options.wg;
-        } else {
-          $("opt_wg").parentElement.style.display = "none"
-        }
-        if (typeof data.options.ws != "undefined") {
-          $("opt_ws").textContent = data.options.ws;
-        }
-        else {
-          $("opt_ws").parentElement.style.display = "none"
-        }
-        if (typeof data.options.noendgaps != "undefined") {
-          $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off");
-        }
-        else {
-          $("opt_noendgaps").parentElement.style.display = "none"
-        }
-        $("opt_substring").className = (data.options.substring ? "on" : "off");
-      }
-      </script>
-    </div>
-    <!-- list information on this program -->
-    <div id="info_sec" class="bar">
-      <div class="subsection">
-        <h5 id="version">MEME version</h5>
-        <span id="ins_version"></span> 
-        (Release date: <span id="ins_release"></span>)<br>
-      </div>
-      <script>
-        $("ins_version").innerHTML = data["version"];
-        $("ins_release").innerHTML = data["release"];
-      </script>
-      <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div>
-      <div class="subsection">
-        <h5 id="command">Command line</h5>
-        <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly">
-        </textarea>
-        <script>$("cmd").value = data["cmd"].join(" ");</script>
-      </div>
-    </div>
-    
-  </body>
-</html>
+          "sequences": [
+            {
+              "name": "chr21_19617074_19617124_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_26934381_26934431_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_28217753_28217803_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31710037_31710087_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31744582_31744632_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31768316_31768366_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31914206_31914256_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31933633_31933683_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31962741_31962791_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31964683_31964733_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31973364_31973414_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_31992870_31992920_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_32185595_32185645_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_32202076_32202126_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_32253899_32253949_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_32410820_32410870_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_36411748_36411798_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_37838750_37838800_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_45705687_45705737_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_45971413_45971463_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_45978668_45978718_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_45993530_45993580_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46020421_46020471_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46031920_46031970_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46046964_46047014_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46057197_46057247_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46086869_46086919_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_46102103_46102153_-",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_47517957_47518007_+",
+              "length": 50,
+              "weight": 1.000000
+            }, {
+              "name": "chr21_47575506_47575556_-",
+              "length": 50,
+              "weight": 1.000000
+            }
+          ]
+        },
\ No newline at end of file