Mercurial > repos > iuc > meme_fimo
diff test-data/meme_output_test1.html @ 20:613c75eee7bd draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author | iuc |
---|---|
date | Mon, 14 Jul 2025 21:33:56 +0000 |
parents | c5209f38700d |
children |
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--- a/test-data/meme_output_test1.html Thu Aug 29 10:19:40 2024 +0000 +++ b/test-data/meme_output_test1.html Mon Jul 14 21:33:56 2025 +0000 @@ -1,73 +1,124 @@ - <script> - { - $("opt_mod").className = data.options.mod; - $("opt_objfun").textContent = data.options.objfun; - $("opt_spfun").textContent = data.options.spfun; - $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); - $("opt_nmotifs").textContent = data.options.nmotifs; - $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit"); - $("opt_minw").textContent = data.options.minw; - $("opt_maxw").textContent = data.options.maxw; - $("opt_minsites").textContent = data.options.minsites; - $("opt_maxsites").textContent = data.options.maxsites; - $("opt_wnsites").textContent = data.options.wnsites; - $("opt_spmap").className = data.options.spmap; - $("opt_spfuzz").textContent = data.options.spfuzz; - $("opt_prior").className = data.options.prior; - if (data.options.prior == "dirichlet") { - $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true); - } else { - $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source; - } - $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b; - $("opt_maxiter").textContent = data.options.maxiter; - $("opt_distance").textContent = data.options.distance; - $("opt_searchsize").textContent = data.options.searchsize; - if (typeof data.options.csites != "undefined") { - $("opt_csites").textContent = data.options.csites; - } else { - $("opt_csites").parentElement.style.display = "none" - } - if (typeof data.options.wg != "undefined") { - $("opt_wg").textContent = data.options.wg; - } else { - $("opt_wg").parentElement.style.display = "none" - } - if (typeof data.options.ws != "undefined") { - $("opt_ws").textContent = data.options.ws; - } - else { - $("opt_ws").parentElement.style.display = "none" - } - if (typeof data.options.noendgaps != "undefined") { - $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off"); - } - else { - $("opt_noendgaps").parentElement.style.display = "none" - } - $("opt_substring").className = (data.options.substring ? "on" : "off"); - } - </script> - </div> - <!-- list information on this program --> - <div id="info_sec" class="bar"> - <div class="subsection"> - <h5 id="version">MEME version</h5> - <span id="ins_version"></span> - (Release date: <span id="ins_release"></span>)<br> - </div> - <script> - $("ins_version").innerHTML = data["version"]; - $("ins_release").innerHTML = data["release"]; - </script> - <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div> - <div class="subsection"> - <h5 id="command">Command line</h5> - <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly"> - </textarea> - <script>$("cmd").value = data["cmd"].join(" ");</script> - </div> - </div> - - </body> -</html> + "sequences": [ + { + "name": "chr21_19617074_19617124_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_26934381_26934431_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_28217753_28217803_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31710037_31710087_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31744582_31744632_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31768316_31768366_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31914206_31914256_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31933633_31933683_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31962741_31962791_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31964683_31964733_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31973364_31973414_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_31992870_31992920_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_32185595_32185645_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_32202076_32202126_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_32253899_32253949_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_32410820_32410870_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_36411748_36411798_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_37838750_37838800_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_45705687_45705737_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_45971413_45971463_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_45978668_45978718_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_45993530_45993580_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46020421_46020471_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46031920_46031970_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46046964_46047014_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46057197_46057247_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46086869_46086919_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_46102103_46102153_-", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_47517957_47518007_+", + "length": 50, + "weight": 1.000000 + }, { + "name": "chr21_47575506_47575556_-", + "length": 50, + "weight": 1.000000 + } + ] + }, \ No newline at end of file