Mercurial > repos > iuc > meme_fimo
view test-data/dreme1.xml @ 12:02f6ad791bbf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author | iuc |
---|---|
date | Wed, 25 Apr 2018 12:12:47 -0400 |
parents | |
children |
line wrap: on
line source
<dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> <model> <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line> <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" /> <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> <alphabet name="RNA" like="rna"> <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/> <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/> <letter id="V" symbol="V" equals="ACG" name="Not U"/> <letter id="H" symbol="H" equals="ACU" name="Not G"/> <letter id="D" symbol="D" equals="AGU" name="Not C"/> <letter id="B" symbol="B" equals="CGU" name="Not A"/> <letter id="M" symbol="M" equals="AC" name="Amino"/> <letter id="R" symbol="R" equals="AG" name="Purine"/> <letter id="W" symbol="W" equals="AU" name="Weak"/> <letter id="S" symbol="S" equals="CG" name="Strong"/> <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/> <letter id="K" symbol="K" equals="GU" name="Keto"/> </alphabet> <strands>none</strands> <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> <stop evalue="0"/> <ngen>100</ngen> <add_pv_thresh>0.01</add_pv_thresh> <seed>1</seed> <host>ThinkPad-T450s</host> <when>Thu Apr 19 19:40:08 CEST 2018</when> </model> <motifs>