Mercurial > repos > iuc > meme_fimo
view test-data/dreme_output_test1.html @ 18:c5209f38700d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
---|---|
date | Sat, 09 Apr 2022 08:32:23 +0000 |
parents | 0c5239d1aa65 |
children |
line wrap: on
line source
</div> <div class="box"> <h4>Sequences</h4> <table id="seq_info" class="inputs"> <tr><th>Source <div class="help" data-topic="pop_seq_source"></div></th> <th>Alphabet <div class="help" data-topic="pop_seq_alph"></div></th> <th>Sequence Count <div class="help" data-topic="pop_seq_count"></div></th> </tr> <tr> <td id="ins_seq_source"></td> <td id="ins_seq_alphabet"></td> <td id="ins_seq_count"></td> </tr> </table> <script> { var db = data.sequence_db; $("ins_seq_source").innerHTML = db.file; $("ins_seq_alphabet").innerHTML = current_alphabet.get_alphabet_name(); $("ins_seq_count").innerHTML = db.count; } </script> <h4>Control Sequences</h4> <table id="seq_info" class="inputs"> <tr><th>Source <div class="help" data-topic="pop_seq_source"></div></th> <th>Sequence Count <div class="help" data-topic="pop_seq_count"></div></th> </tr> <tr> <td id="ins_cseq_source"></td> <td id="ins_cseq_count"></td> </tr> </table> <script> { var db = data.control_db; if (db.from == "shuffled") { $("ins_cseq_source").innerHTML = "Shuffled Sequences"; } else { $("ins_cseq_source").innerHTML = db.file; } $("ins_cseq_count").innerHTML = db.count; } </script> <h4>Background</h4> <span id="alpha_bg"></span> <script> { $("alpha_bg").appendChild(make_alpha_bg_table(current_alphabet, data.control_db.freqs)); } </script> <h4>Other Settings</h4> <table id="tbl_settings" class="inputs hide_advanced"> <tr> <th>Strand Handling</th> <td id="opt_strand"> <span class="strand_none">This alphabet only has one strand</span> <span class="strand_given">Only the given strand is processed</span> <span class="strand_both">Both the given and reverse complement strands are processed</span> </td> </tr> <tr><th># REs to Generalize</th><td id="opt_ngen"></td></tr> <tr><th>Shuffle Seed</th><td id="opt_seed"></td></tr> <tr><th>E-value Threshold</th><td id="opt_stop_evalue"></td></tr> <tr><th>Max Motif Count</th><td id="opt_stop_count"></td></tr> <tr><th>Max Run Time</th><td id="opt_stop_time"></td></tr> </table> <script> { $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); $("opt_ngen").innerHTML = data.options.ngen; $("opt_seed").innerHTML = data.options.seed; $("opt_stop_evalue").innerHTML = data.options.stop.evalue; $("opt_stop_count").innerHTML = (typeof data.options.stop.count == "number" ? data.options.stop.count : "No maximum motif count."); $("opt_stop_time").innerHTML = (typeof data.options.stop.time == "number" ? data.options.stop.time + " seconds." : "No maximum running time."); } </script> </div> <!-- list information on this program --> <div id="info_sec" class="bar" style="position:relative"> <div style="position: absolute; right: 0;"><a href="#inputs_sec">Previous</a> <a href="#">Top</a></div> <div class="subsection"> <h5 id="version">DREME version</h5> <span id="ins_version"></span> (Release date: <span id="ins_release"></span>)<br> </div> <script> $("ins_version").innerHTML = data["version"]; $("ins_release").innerHTML = data["release"]; </script> <div class="subsection" id="reference"> <script>print_citation("reference", "DREME");</script> </div> <div class="subsection"> <h5 id="command">Command line</h5> <textarea id="cmd" rows="3" style="width:100%;" readonly="readonly"> </textarea> <script>$("cmd").value = data["cmd"].join(" ");</script> </div> </div> </body> </html>