Mercurial > repos > iuc > meme_fimo

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<html>
  <head>
    <meta charset="UTF-8">
    <title>MEME</title>
    <script>
      // @JSON_VAR data
      var data = {
        "program": "MEME",
        "version": "4.11.0",
        "release": "Thu Nov 26 17:48:49 2015 +1000",
        "stop_reason": "Stopped because requested number of motifs (1) found.",
        "cmd": [
          "meme",
          "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
          "-o",
          "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1912/dataset_2530_files",
          "-nostatus"
        ],
        "options": {
          "mod": "zoops",
          "revcomp": false,
          "nmotifs": 1,
          "minw": 8,
          "maxw": 50,
          "minsites": 2,
          "maxsites": 30,
          "wnsites": 0.8,
          "spmap": "pam",
          "spfuzz": 120,
          "maxwords": -1,
          "prior": "megap",
          "b": 7500,
          "maxiter": 50,
          "distance": 1e-05,
          "wg": 11,
          "ws": 1,
          "noendgaps": false,
          "substring": true
        },
        "alphabet": {
          "name": "Protein",
          "like": "protein",
          "ncore": 20,
          "symbols": [
            {
              "symbol": "A",
              "name": "Alanine",
              "colour": "0000CC"
            }, {
              "symbol": "C",
              "name": "Cysteine",
              "colour": "0000CC"
            }, {
              "symbol": "D",
              "name": "Aspartic acid",
              "colour": "FF00FF"
            }, {
              "symbol": "E",
              "name": "Glutamic acid",
              "colour": "FF00FF"
            }, {
              "symbol": "F",
              "name": "Phenylalanine",
              "colour": "0000CC"
            }, {
              "symbol": "G",
              "name": "Glycine",
              "colour": "FFB300"
            }, {
              "symbol": "H",
              "name": "Histidine",
              "colour": "FFCCCC"
            }, {
              "symbol": "I",
              "name": "Isoleucine",
              "colour": "0000CC"
            }, {
              "symbol": "K",
              "name": "Lysine",
              "colour": "CC0000"
            }, {
              "symbol": "L",
              "name": "Leucine",
              "colour": "0000CC"
            }, {
              "symbol": "M",
              "name": "Methionine",
              "colour": "0000CC"
            }, {
              "symbol": "N",
              "name": "Asparagine",
              "colour": "008000"
            }, {
              "symbol": "P",
              "name": "Proline",
              "colour": "FFFF00"
            }, {
              "symbol": "Q",
              "name": "Glutamine",
author	iuc
date	Tue, 22 Dec 2015 17:01:51 -0500
parents
children	eca84de658b0