Mercurial > repos > iuc > meme_fimo

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<html>
  <head>
    <meta charset="UTF-8">
    <title>MEME</title>
    <script>
      // @JSON_VAR data
      var data = {
        "program": "MEME",
        "version": "4.11.0",
        "release": "Thu Nov 26 17:48:49 2015 +1000",
        "stop_reason": "Stopped because requested number of motifs (1) found.",
        "cmd": [
          "meme",
          "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
          "-o",
          "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files",
          "-nostatus", "-sf", "Galaxy_FASTA_Input", "-dna", "-mod", "zoops",
          "-nmotifs", "1", "-wnsites", "0.8", "-minw", "8", "-maxw", "50",
          "-wg", "11", "-ws", "1", "-maxiter", "50", "-distance", "0.001",
          "-prior", "dirichlet", "-b", "0.01", "-plib",
          "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat",
          "-spmap", "uni", "-spfuzz", "0.5"
        ],
        "options": {
          "mod": "zoops",
          "revcomp": false,
          "nmotifs": 1,
          "minw": 8,
          "maxw": 50,
          "minsites": 2,
          "maxsites": 30,
          "wnsites": 0.8,
          "spmap": "uni",
          "spfuzz": 0.5,
          "maxwords": -1,
          "prior": "dirichlet",
          "b": 0.01,
          "maxiter": 50,
          "distance": 0.001,
          "wg": 11,
          "ws": 1,
          "noendgaps": false,
          "substring": true
        },
        "alphabet": {
          "name": "DNA",
          "like": "dna",
          "ncore": 4,
          "symbols": [
            {
              "symbol": "A",
              "name": "Adenine",
              "colour": "CC0000",
              "complement": "T"
            }, {
              "symbol": "C",
              "name": "Cytosine",
              "colour": "0000CC",
              "complement": "G"
            }, {
              "symbol": "G",
              "name": "Guanine",
              "colour": "FFB300",
              "complement": "C"
            }, {
              "symbol": "T",
              "aliases": "U",
              "name": "Thymine",
              "colour": "008000",
              "complement": "A"
            }, {
              "symbol": "N",
              "aliases": "X.",
              "name": "Any base",
              "equals": "ACGT"
            }, {
              "symbol": "V",
              "name": "Not T",
              "equals": "ACG"
            }, {
              "symbol": "H",
              "name": "Not G",
              "equals": "ACT"
            }, {
              "symbol": "D",
              "name": "Not C",
              "equals": "AGT"
            }, {
              "symbol": "B",
              "name": "Not A",
              "equals": "CGT"
            }, {
              "symbol": "M",
              "name": "Amino",
              "equals": "AC"
            }, {
              "symbol": "R",
              "name": "Purine",
              "equals": "AG"
author	iuc
date	Wed, 20 Jan 2016 08:46:01 -0500
parents	fd522a964017
children	eca84de658b0