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comparison test-data/dreme_output_test1.txt @ 18:19237efe98d1 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:34:02 +0000
parents 3f0dd362b755
children
comparison
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17:e7242484929c 18:19237efe98d1
1 # DREME 5.0.5 1 MOTIF UUYUCY DREME-1
2 # negatives: 1000 from shuffled positives
3 2
4 MEME version 5.0.5
5 ALPHABET "RNA" RNA-LIKE
6 A "Adenine" CC0000
7 C "Cytosine" 0000CC
8 G "Guanine" FFB300
9 U "Uracil" 008000
10 N "Any base" = ACGU
11 X = ACGU
12 . = ACGU
13 V "Not U" = ACG
14 H "Not G" = ACU
15 D "Not C" = AGU
16 B "Not A" = CGU
17 M "Amino" = AC
18 R "Purine" = AG
19 W "Weak" = AU
20 S "Strong" = CG
21 Y "Pyrimidine" = CU
22 K "Keto" = GU
23 T = U
24 END ALPHABET
25 Background letter frequencies (from dataset):
26 A 0.221 C 0.245 G 0.221 U 0.312
27 MOTIF UUYUCY DREME-1
28 # Word Pos Neg P-value E-value 3 # Word Pos Neg P-value E-value
29 # BEST UUYUCY 387 210 2.6e-018 1.2e-013 4 # BEST UUYUCY 387 210 2.6e-018 1.2e-013
30 # UUUUCC 147 75 1.8e-007 8.1e-003 5 # UUUUCC 147 75 1.8e-007 8.1e-003
31 # UUUUCU 155 94 2.2e-005 1.0e+000 6 # UUUUCU 155 94 2.2e-005 1.0e+000
32 # UUCUCU 94 51 1.3e-004 6.1e+000 7 # UUCUCU 94 51 1.3e-004 6.1e+000
33 # UUCUCC 75 42 1.1e-003 5.0e+001 8 # UUCUCC 75 42 1.1e-003 5.0e+001
9
34 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 1.2e-013 10 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 1.2e-013
35 0.000000 0.000000 0.000000 1.000000 11 0.000000 0.000000 0.000000 1.000000
36 0.000000 0.000000 0.000000 1.000000 12 0.000000 0.000000 0.000000 1.000000
37 0.000000 0.294118 0.000000 0.705882 13 0.000000 0.294118 0.000000 0.705882
38 0.000000 0.000000 0.000000 1.000000 14 0.000000 0.000000 0.000000 1.000000
39 0.000000 1.000000 0.000000 0.000000 15 0.000000 1.000000 0.000000 0.000000
40 0.000000 0.474946 0.000000 0.525054 16 0.000000 0.474946 0.000000 0.525054
17
18
41 MOTIF YAGG DREME-2 19 MOTIF YAGG DREME-2
20
42 # Word Pos Neg P-value E-value 21 # Word Pos Neg P-value E-value
43 # BEST YAGG 600 416 1.1e-016 5.1e-012 22 # BEST YAGG 600 416 1.1e-016 5.1e-012
44 # CAGG 441 304 1.5e-010 6.6e-006 23 # CAGG 441 304 1.5e-010 6.6e-006
45 # UAGG 232 165 1.1e-004 4.7e+000 24 # UAGG 232 165 1.1e-004 4.7e+000
25
46 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 5.1e-012 26 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 5.1e-012
47 0.000000 0.692308 0.000000 0.307692 27 0.000000 0.692308 0.000000 0.307692
48 1.000000 0.000000 0.000000 0.000000 28 1.000000 0.000000 0.000000 0.000000
49 0.000000 0.000000 1.000000 0.000000 29 0.000000 0.000000 1.000000 0.000000
50 0.000000 0.000000 1.000000 0.000000 30 0.000000 0.000000 1.000000 0.000000
31
32
51 MOTIF GAAGAW DREME-3 33 MOTIF GAAGAW DREME-3
34
52 # Word Pos Neg P-value E-value 35 # Word Pos Neg P-value E-value
53 # BEST GAAGAW 81 22 8.2e-010 3.4e-005 36 # BEST GAAGAW 81 22 8.2e-010 3.4e-005
54 # GAAGAU 45 7 2.4e-008 9.9e-004 37 # GAAGAU 45 7 2.4e-008 9.9e-004
55 # GAAGAA 40 16 7.9e-004 3.3e+001 38 # GAAGAA 40 16 7.9e-004 3.3e+001
39
56 letter-probability matrix: alength= 4 w= 6 nsites= 89 E= 3.4e-005 40 letter-probability matrix: alength= 4 w= 6 nsites= 89 E= 3.4e-005
57 0.000000 0.000000 1.000000 0.000000 41 0.000000 0.000000 1.000000 0.000000
58 1.000000 0.000000 0.000000 0.000000 42 1.000000 0.000000 0.000000 0.000000
59 1.000000 0.000000 0.000000 0.000000 43 1.000000 0.000000 0.000000 0.000000
60 0.000000 0.000000 1.000000 0.000000 44 0.000000 0.000000 1.000000 0.000000
61 1.000000 0.000000 0.000000 0.000000 45 1.000000 0.000000 0.000000 0.000000
62 0.494382 0.000000 0.000000 0.505618 46 0.494382 0.000000 0.000000 0.505618
47
48
63 MOTIF SMUGGA DREME-4 49 MOTIF SMUGGA DREME-4
50
64 # Word Pos Neg P-value E-value 51 # Word Pos Neg P-value E-value
65 # BEST SMUGGA 110 47 9.1e-008 3.7e-003 52 # BEST SMUGGA 110 47 9.1e-008 3.7e-003
66 # GAUGGA 22 6 1.7e-003 7.1e+001 53 # GAUGGA 22 6 1.7e-003 7.1e+001
67 # GCUGGA 33 14 3.6e-003 1.5e+002 54 # GCUGGA 33 14 3.6e-003 1.5e+002
68 # CCUGGA 32 15 8.6e-003 3.5e+002 55 # CCUGGA 32 15 8.6e-003 3.5e+002
69 # CAUGGA 29 13 9.1e-003 3.7e+002 56 # CAUGGA 29 13 9.1e-003 3.7e+002
57
70 letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 3.7e-003 58 letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 3.7e-003
71 0.000000 0.529412 0.470588 0.000000 59 0.000000 0.529412 0.470588 0.000000
72 0.428571 0.571429 0.000000 0.000000 60 0.428571 0.571429 0.000000 0.000000
73 0.000000 0.000000 0.000000 1.000000 61 0.000000 0.000000 0.000000 1.000000
74 0.000000 0.000000 1.000000 0.000000 62 0.000000 0.000000 1.000000 0.000000
75 0.000000 0.000000 1.000000 0.000000 63 0.000000 0.000000 1.000000 0.000000
76 1.000000 0.000000 0.000000 0.000000 64 1.000000 0.000000 0.000000 0.000000
77 # Stopping reason: E-value threshold exceeded