Mercurial > repos > iuc > meme_meme

comparison test-data/dreme_output_test2.txt @ 14:3f0dd362b755 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:05:15 -0500
parents 57e5d9382f36
children 19237efe98d1
comparison
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13:57e5d9382f36 14:3f0dd362b755
1 # DREME 4.12.0 1 # DREME 5.0.5
2 # command: dreme -o ./dreme_test2_out -p dreme_test_sites.fa -norc -rna -s 1 -e 1e-05 -g 100 -mink 4 -maxk 10
3 # positives: 1000 from dreme_test_sites.fa (Thu Apr 26 15:09:03 CEST 2018)
4 # negatives: 1000 from shuffled positives 2 # negatives: 1000 from shuffled positives
5 # host: ThinkPad-T450s
6 # when: Thu May 03 13:22:11 CEST 2018
7 3
8 MEME version 4.12.0 4 MEME version 5.0.5
9
10 ALPHABET "RNA" RNA-LIKE 5 ALPHABET "RNA" RNA-LIKE
11 A "Adenine" CC0000 6 A "Adenine" CC0000
12 C "Cytosine" 0000CC 7 C "Cytosine" 0000CC
13 G "Guanine" FFB300 8 G "Guanine" FFB300
14 U "Uracil" 008000 9 U "Uracil" 008000
25 S "Strong" = CG 20 S "Strong" = CG
26 Y "Pyrimidine" = CU 21 Y "Pyrimidine" = CU
27 K "Keto" = GU 22 K "Keto" = GU
28 T = U 23 T = U
29 END ALPHABET 24 END ALPHABET
30
31 Background letter frequencies (from dataset): 25 Background letter frequencies (from dataset):
32 A 0.221 C 0.245 G 0.221 U 0.312 26 A 0.221 C 0.245 G 0.221 U 0.312
33
34
35 MOTIF UUYUCY DREME-1 27 MOTIF UUYUCY DREME-1
36
37 # Word Pos Neg P-value E-value 28 # Word Pos Neg P-value E-value
38 # BEST UUYUCY 387 210 2.6e-018 3.3e-013 29 # BEST UUYUCY 387 210 2.6e-018 3.3e-013
39 # UUUUCC 147 75 1.8e-007 2.2e-002 30 # UUUUCC 147 75 1.8e-007 2.2e-002
40 # UUUUCU 155 94 2.2e-005 2.8e+000 31 # UUUUCU 155 94 2.2e-005 2.8e+000
41 # UUCUCU 94 51 1.3e-004 1.7e+001 32 # UUCUCU 94 51 1.3e-004 1.7e+001
42 # UUCUCC 75 42 1.1e-003 1.4e+002 33 # UUCUCC 75 42 1.1e-003 1.4e+002
43
44 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013 34 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013
45 0.000000 0.000000 0.000000 1.000000 35 0.000000 0.000000 0.000000 1.000000
46 0.000000 0.000000 0.000000 1.000000 36 0.000000 0.000000 0.000000 1.000000
47 0.000000 0.294118 0.000000 0.705882 37 0.000000 0.294118 0.000000 0.705882
48 0.000000 0.000000 0.000000 1.000000 38 0.000000 0.000000 0.000000 1.000000
49 0.000000 1.000000 0.000000 0.000000 39 0.000000 1.000000 0.000000 0.000000
50 0.000000 0.474946 0.000000 0.525054 40 0.000000 0.474946 0.000000 0.525054
51
52
53 MOTIF YAGG DREME-2 41 MOTIF YAGG DREME-2
54
55 # Word Pos Neg P-value E-value 42 # Word Pos Neg P-value E-value
56 # BEST YAGG 600 416 1.1e-016 1.4e-011 43 # BEST YAGG 600 416 1.1e-016 1.4e-011
57 # CAGG 441 304 1.5e-010 1.8e-005 44 # CAGG 441 304 1.5e-010 1.8e-005
58 # UAGG 232 165 1.1e-004 1.3e+001 45 # UAGG 232 165 1.1e-004 1.3e+001
59
60 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011 46 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011
61 0.000000 0.692308 0.000000 0.307692 47 0.000000 0.692308 0.000000 0.307692
62 1.000000 0.000000 0.000000 0.000000 48 1.000000 0.000000 0.000000 0.000000
63 0.000000 0.000000 1.000000 0.000000 49 0.000000 0.000000 1.000000 0.000000
64 0.000000 0.000000 1.000000 0.000000 50 0.000000 0.000000 1.000000 0.000000
65
66
67 # Stopping reason: E-value threshold exceeded 51 # Stopping reason: E-value threshold exceeded
68 # Running time: 15.97 seconds