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comparison test-data/fimo_output_test1.xml @ 14:3f0dd362b755 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:05:15 -0500
parents 57e5d9382f36
children 19237efe98d1
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13:57e5d9382f36 14:3f0dd362b755
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <!-- Begin document body --> 2 <!-- Begin document body -->
3 <fimo version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> 3 <fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo" 5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
6 > 6 >
7 <command-line>fimo -oc fimo_test1_out meme_fimo_input_1.xml hsa_chrM.fa</command-line>
8 <settings> 7 <settings>
9 <setting name="output directory">fimo_test1_out</setting>
10 <setting name="MEME file name">meme_fimo_input_1.xml</setting>
11 <setting name="sequence file name">hsa_chrM.fa</setting>
12 <setting name="background file name">--nrdb--</setting> 8 <setting name="background file name">--nrdb--</setting>
13 <setting name="allow clobber">true</setting> 9 <setting name="allow clobber">false</setting>
14 <setting name="compute q-values">true</setting> 10 <setting name="compute q-values">true</setting>
15 <setting name="parse genomic coord.">false</setting> 11 <setting name="parse genomic coord.">false</setting>
16 <setting name="text only">false</setting> 12 <setting name="text only">false</setting>
17 <setting name="scan both strands">true</setting> 13 <setting name="scan both strands">true</setting>
18 <setting name="output threshold">0.0001</setting> 14 <setting name="output threshold">0.0001</setting>