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comparison test-data/meme_output_txt_2.txt @ 9:794b2859c286 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 211bfa0f58a0691fb7b0c2623763112fdcb76dbd
author iuc
date Thu, 29 Jun 2017 20:39:45 -0400
parents 487ce3fa1822
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8:e8b209806a20 9:794b2859c286
1 ******************************************************************************** 1 ********************************************************************************
2 MEME - Motif discovery tool 2 MEME - Motif discovery tool
3 ******************************************************************************** 3 ********************************************************************************
4 MEME version 4.11.1 (Release date: Fri Jan 15 12:51:59 2016 -0800) 4 MEME version 4.11.2 (Release date: Thu May 05 14:58:55 2016 -0700)
5 5
6 For further information on how to interpret these results or to get 6 For further information on how to interpret these results or to get
7 a copy of the MEME software please access http://meme-suite.org . 7 a copy of the MEME software please access http://meme-suite.org .
8 8
9 This file may be used as input to the MAST algorithm for searching 9 This file may be used as input to the MAST algorithm for searching
53 COMMAND LINE SUMMARY 53 COMMAND LINE SUMMARY
54 ******************************************************************************** 54 ********************************************************************************
55 This information can also be useful in the event you wish to report a 55 This information can also be useful in the event you wish to report a
56 problem with the MEME software. 56 problem with the MEME software.
57 57
58 command: meme 58 command: meme /tmp/tmpCNK6l0/files/000/dataset_26.dat -o /tmp/tmpCNK6l0/job_working_directory/000/14/dataset_28_files -nostatus -maxsize 1000000 -sf Galaxy_FASTA_Input -dna -mod zoops -nmotifs 1 -wnsites 0.8 -evt inf -minw 8 -maxw 50 -wg 11 -ws 1 -maxiter 50 -distance 0.001 -prior dirichlet -b 0.01 -plib /tmp/tmpCNK6l0/files/000/dataset_27.dat -spmap uni -spfuzz 0.5
59 59
60 model: mod= zoops nmotifs= 1 evt= inf 60 model: mod= zoops nmotifs= 1 evt= inf
61 object function= E-value of product of p-values 61 object function= E-value of product of p-values
62 width: minw= 8 maxw= 50 62 width: minw= 8 maxw= 50
63 width: wg= 11 ws= 1 endgaps= yes 63 width: wg= 11 ws= 1 endgaps= yes
67 em: prior= dirichlet b= 0.01 maxiter= 50 67 em: prior= dirichlet b= 0.01 maxiter= 50
68 distance= 0.001 68 distance= 0.001
69 data: n= 1500 N= 30 shuffle= -1 69 data: n= 1500 N= 30 shuffle= -1
70 strands: + 70 strands: +
71 sample: seed= 0 ctfrac= -1 maxwords= -1 71 sample: seed= 0 ctfrac= -1 maxwords= -1
72 Dirichlet mixture priors file: 72 Dirichlet mixture priors file: dataset_27.dat
73 Letter frequencies in dataset: 73 Letter frequencies in dataset:
74 A 0.294 C 0.231 G 0.257 T 0.217 74 A 0.294 C 0.231 G 0.257 T 0.217
75 Background letter frequencies (from dataset with add-one prior applied): 75 Background letter frequencies (from dataset with add-one prior applied):
76 A 0.294 C 0.231 G 0.257 T 0.217 76 A 0.294 C 0.231 G 0.257 T 0.217
77 ******************************************************************************** 77 ********************************************************************************
259 -------------------------------------------------------------------------------- 259 --------------------------------------------------------------------------------
260 260
261 261
262 262
263 263
264 Time 264 Time 0.32 secs.
265 265
266 ******************************************************************************** 266 ********************************************************************************
267 267
268 268
269 ******************************************************************************** 269 ********************************************************************************
312 312
313 ******************************************************************************** 313 ********************************************************************************
314 Stopped because requested number of motifs (1) found. 314 Stopped because requested number of motifs (1) found.
315 ******************************************************************************** 315 ********************************************************************************
316 316
317 CPU: 317 CPU: bigsky
318 318
319 ******************************************************************************** 319 ********************************************************************************