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comparison test-data/meme_output_custom.txt @ 20:faa378fa0c81 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:26 +0000
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19:7ce0fe11b411 20:faa378fa0c81
1 ********************************************************************************
2 MEME - Motif discovery tool
3 ********************************************************************************
4 MEME version 5.5.8 (Release date: Thu May 15 15:01:46 2025 -0700)
5
6 For further information on how to interpret these results please access https://meme-suite.org/meme.
7 To get a copy of the MEME Suite software please access https://meme-suite.org.
8
9 ********************************************************************************
10
11
12 ********************************************************************************
13 REFERENCE
14 ********************************************************************************
15 If you use this program in your research, please cite:
16
17 Timothy L. Bailey and Charles Elkan,
18 "Fitting a mixture model by expectation maximization to
19 discover motifs in biopolymers",
20 Proceedings of the Second International Conference on Intelligent Systems
21 for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
22 ********************************************************************************
23
24
25 ********************************************************************************
26 ALPHABET "DNA with covalent modifications" DNA-LIKE
27 ********************************************************************************
28 A "Adenine" 8510A8 ~ T "Thymine" A89610
29 C "Cytosine" A50026 ~ G "Guanine" 313695
30 a "N6-methyladenine" 8510A8 ~ t "Thymine_lowercase" 756BB1
31 c "5-Carboxylcytosine" FEE090 ~ 4 "Guanine:5-Carboxylcytosine" E0F3F8
32 f "5-Formylcytosine" FDAE61 ~ 3 "Guanine:5-Formylcytosine" ABD9E9
33 g "modified_g" 00897B ~ 5 "cytosine_lowercase" 53698A
34 h "5-Hydroxymethylcytosine" F46D43 ~ 2 "Guanine:5-Hydroxymethylcytosine" 74ADD1
35 m "5-Methylcytosine" D73027 ~ 1 "Guanine:5-Methylcytosine" 4575B4
36 ? = ACGTacfghmt12345
37 ********************************************************************************
38
39 ********************************************************************************
40 TRAINING SET
41 ********************************************************************************
42 PRIMARY SEQUENCES= Galaxy_FASTA_Input
43 CONTROL SEQUENCES= --none--
44 Sequence name Weight Length Sequence name Weight Length
45 ------------- ------ ------ ------------- ------ ------
46 chr21_19617074_19617124_ 1.0000 50 chr21_26934381_26934431_ 1.0000 50
47 chr21_28217753_28217803_ 1.0000 50 chr21_31710037_31710087_ 1.0000 50
48 chr21_31744582_31744632_ 1.0000 50 chr21_31768316_31768366_ 1.0000 50
49 chr21_31914206_31914256_ 1.0000 50 chr21_31933633_31933683_ 1.0000 50
50 chr21_31962741_31962791_ 1.0000 50 chr21_31964683_31964733_ 1.0000 50
51 chr21_31973364_31973414_ 1.0000 50 chr21_31992870_31992920_ 1.0000 50
52 chr21_32185595_32185645_ 1.0000 50 chr21_32202076_32202126_ 1.0000 50
53 chr21_32253899_32253949_ 1.0000 50 chr21_32410820_32410870_ 1.0000 50
54 chr21_36411748_36411798_ 1.0000 50 chr21_37838750_37838800_ 1.0000 50
55 chr21_45705687_45705737_ 1.0000 50 chr21_45971413_45971463_ 1.0000 50
56 chr21_45978668_45978718_ 1.0000 50 chr21_45993530_45993580_ 1.0000 50
57 chr21_46020421_46020471_ 1.0000 50 chr21_46031920_46031970_ 1.0000 50
58 chr21_46046964_46047014_ 1.0000 50 chr21_46057197_46057247_ 1.0000 50
59 chr21_46086869_46086919_ 1.0000 50 chr21_46102103_46102153_ 1.0000 50
60 chr21_47517957_47518007_ 1.0000 50 chr21_47575506_47575556_ 1.0000 50
61 ********************************************************************************