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comparison test-data/dreme_output_test2.txt @ 19:7ce0fe11b411 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:20:10 +0000
parents 19237efe98d1
children
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18:19237efe98d1 19:7ce0fe11b411
1 ALPHABET "RNA" RNA-LIKE
2 A "Adenine" CC0000
3 C "Cytosine" 0000CC
4 G "Guanine" FFB300
5 U "Uracil" 008000
6 N "Any base" = ACGU
7 X = ACGU
8 . = ACGU
9 V "Not U" = ACG
10 H "Not G" = ACU
11 D "Not C" = AGU
12 B "Not A" = CGU
13 M "Amino" = AC
14 R "Purine" = AG
15 W "Weak" = AU
16 S "Strong" = CG
17 Y "Pyrimidine" = CU
18 K "Keto" = GU
19 T = U
20 END ALPHABET
21
22 Background letter frequencies (from dataset):
23 A 0.221 C 0.245 G 0.221 U 0.312
24
25
26 MOTIF UUYUCY DREME-1
27
28 # Word Pos Neg P-value E-value
29 # BEST UUYUCY 387 210 2.6e-018 3.3e-013
30 # UUUUCC 147 75 1.8e-007 2.2e-002
31 # UUUUCU 155 94 2.2e-005 2.8e+000
32 # UUCUCU 94 51 1.3e-004 1.7e+001
33 # UUCUCC 75 42 1.1e-003 1.4e+002
34
35 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013
36 0.000000 0.000000 0.000000 1.000000
37 0.000000 0.000000 0.000000 1.000000
38 0.000000 0.294118 0.000000 0.705882
39 0.000000 0.000000 0.000000 1.000000
40 0.000000 1.000000 0.000000 0.000000
41 0.000000 0.474946 0.000000 0.525054
42
43
44 MOTIF YAGG DREME-2
45
46 # Word Pos Neg P-value E-value
47 # BEST YAGG 600 416 1.1e-016 1.4e-011
48 # CAGG 441 304 1.5e-010 1.8e-005
49 # UAGG 232 165 1.1e-004 1.3e+001
50
51 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011
52 0.000000 0.692308 0.000000 0.307692
53 1.000000 0.000000 0.000000 0.000000
54 0.000000 0.000000 1.000000 0.000000
55 0.000000 0.000000 1.000000 0.000000