Mercurial > repos > iuc > meme_meme

diff test-data/alphabet.txt @ 20:faa378fa0c81 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:26 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/alphabet.txt	Mon Jul 14 21:33:26 2025 +0000
@@ -0,0 +1,13 @@
+ALPHABET "DNA with covalent modifications" DNA-LIKE
+
+# Core uppercase symbols
+A "Adenine" 8510A8 ~ T "Thymine" A89610
+C "Cytosine" A50026 ~ G "Guanine" 313695
+
+# Covalent modifications
+m "5-Methylcytosine" D73027 ~ 1 "Guanine:5-Methylcytosine" 4575B4
+h "5-Hydroxymethylcytosine" F46D43 ~ 2 "Guanine:5-Hydroxymethylcytosine" 74ADD1
+f "5-Formylcytosine" FDAE61 ~ 3 "Guanine:5-Formylcytosine" ABD9E9
+c "5-Carboxylcytosine" FEE090 ~ 4 "Guanine:5-Carboxylcytosine" E0F3F8
+a "N6-methyladenine" 8510A8 ~ t "Thymine_lowercase" 756BB1
+g "modified_g" 00897B ~ 5 "cytosine_lowercase" 53698A