Mercurial > repos > iuc > meme_meme

diff test-data/dreme_output_test1.xml @ 19:7ce0fe11b411 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:20:10 +0000
parents 19237efe98d1
children
line wrap: on
line diff
--- a/test-data/dreme_output_test1.xml	Sat Apr 09 08:34:02 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,44 +0,0 @@
-  <motifs>
-    <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="1.2e-013" unerased_evalue="1.2e-013">
-      <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
-      <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
-      <pos A="0.000000" C="0.294118" G="0.000000" U="0.705882"/>
-      <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
-      <pos A="0.000000" C="1.000000" G="0.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.474946" G="0.000000" U="0.525054"/>
-      <match seq="UUUUCC" p="147" n="75" pvalue="1.8e-007" evalue="8.1e-003"/>
-      <match seq="UUUUCU" p="155" n="94" pvalue="2.2e-005" evalue="1.0e+000"/>
-      <match seq="UUCUCU" p="94" n="51" pvalue="1.3e-004" evalue="6.1e+000"/>
-      <match seq="UUCUCC" p="75" n="42" pvalue="1.1e-003" evalue="5.0e+001"/>
-    </motif>
-    <motif id="m02" alt="DREME-2" seq="YAGG" length="4" nsites="793" p="600" n="416" pvalue="1.1e-016" evalue="5.1e-012" unerased_evalue="2.4e-012">
-      <pos A="0.000000" C="0.692308" G="0.000000" U="0.307692"/>
-      <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <match seq="CAGG" p="441" n="304" pvalue="1.5e-010" evalue="6.6e-006"/>
-      <match seq="UAGG" p="232" n="165" pvalue="1.1e-004" evalue="4.7e+000"/>
-    </motif>
-    <motif id="m03" alt="DREME-3" seq="GAAGAW" length="6" nsites="89" p="81" n="22" pvalue="8.2e-010" evalue="3.4e-005" unerased_evalue="3.5e-004">
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
-      <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
-      <pos A="0.494382" C="0.000000" G="0.000000" U="0.505618"/>
-      <match seq="GAAGAU" p="45" n="7" pvalue="2.4e-008" evalue="9.9e-004"/>
-      <match seq="GAAGAA" p="40" n="16" pvalue="7.9e-004" evalue="3.3e+001"/>
-    </motif>
-    <motif id="m04" alt="DREME-4" seq="SMUGGA" length="6" nsites="119" p="110" n="47" pvalue="9.1e-008" evalue="3.7e-003" unerased_evalue="2.6e-005">
-      <pos A="0.000000" C="0.529412" G="0.470588" U="0.000000"/>
-      <pos A="0.428571" C="0.571429" G="0.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
-      <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
-      <match seq="GAUGGA" p="22" n="6" pvalue="1.7e-003" evalue="7.1e+001"/>
-      <match seq="GCUGGA" p="33" n="14" pvalue="3.6e-003" evalue="1.5e+002"/>
-      <match seq="CCUGGA" p="32" n="15" pvalue="8.6e-003" evalue="3.5e+002"/>
-      <match seq="CAUGGA" p="29" n="13" pvalue="9.1e-003" evalue="3.7e+002"/>
-    </motif>
-  </motifs>
\ No newline at end of file