Mercurial > repos > iuc > meme_meme
view test-data/fimo_output_test2.xml @ 18:19237efe98d1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
---|---|
date | Sat, 09 Apr 2022 08:34:02 +0000 |
parents | 3f0dd362b755 |
children |
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<setting name="compute q-values">true</setting> <setting name="parse genomic coord.">false</setting> <setting name="text only">false</setting> <setting name="scan both strands">true</setting> <setting name="output threshold">0.0001</setting> <setting name="threshold type">p-value</setting> <setting name="max stored scores">100000</setting> <setting name="pseudocount">0.1</setting> <setting name="verbosity">2</setting> </settings> <sequence-data num-sequences="1" num-residues="16569" /> <alphabet name="DNA" like="dna"> <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/> <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/> <letter id="V" symbol="V" equals="ACG" name="Not T"/> <letter id="H" symbol="H" equals="ACT" name="Not G"/> <letter id="D" symbol="D" equals="AGT" name="Not C"/> <letter id="B" symbol="B" equals="CGT" name="Not A"/> <letter id="M" symbol="M" equals="AC" name="Amino"/> <letter id="R" symbol="R" equals="AG" name="Purine"/> <letter id="W" symbol="W" equals="AT" name="Weak"/> <letter id="S" symbol="S" equals="CG" name="Strong"/> <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/> <letter id="K" symbol="K" equals="GT" name="Keto"/> </alphabet> <motif name="ACTAAYH" alt="DREME-1" width="7" best-possible-match="ACTAACA"/> <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/> <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/> <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/> <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/> <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/>