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comparison test-data/dreme_output_test2.txt @ 6:5f95d385a33c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:33:29 +0000
parents ff2f53a32d0e
children
comparison
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5:164067a66a5c 6:5f95d385a33c
1 # DREME 5.0.5
2 # negatives: 1000 from shuffled positives
3
4 MEME version 5.0.5
5 ALPHABET "RNA" RNA-LIKE 1 ALPHABET "RNA" RNA-LIKE
6 A "Adenine" CC0000 2 A "Adenine" CC0000
7 C "Cytosine" 0000CC 3 C "Cytosine" 0000CC
8 G "Guanine" FFB300 4 G "Guanine" FFB300
9 U "Uracil" 008000 5 U "Uracil" 008000
20 S "Strong" = CG 16 S "Strong" = CG
21 Y "Pyrimidine" = CU 17 Y "Pyrimidine" = CU
22 K "Keto" = GU 18 K "Keto" = GU
23 T = U 19 T = U
24 END ALPHABET 20 END ALPHABET
21
25 Background letter frequencies (from dataset): 22 Background letter frequencies (from dataset):
26 A 0.221 C 0.245 G 0.221 U 0.312 23 A 0.221 C 0.245 G 0.221 U 0.312
24
25
27 MOTIF UUYUCY DREME-1 26 MOTIF UUYUCY DREME-1
27
28 # Word Pos Neg P-value E-value 28 # Word Pos Neg P-value E-value
29 # BEST UUYUCY 387 210 2.6e-018 3.3e-013 29 # BEST UUYUCY 387 210 2.6e-018 3.3e-013
30 # UUUUCC 147 75 1.8e-007 2.2e-002 30 # UUUUCC 147 75 1.8e-007 2.2e-002
31 # UUUUCU 155 94 2.2e-005 2.8e+000 31 # UUUUCU 155 94 2.2e-005 2.8e+000
32 # UUCUCU 94 51 1.3e-004 1.7e+001 32 # UUCUCU 94 51 1.3e-004 1.7e+001
33 # UUCUCC 75 42 1.1e-003 1.4e+002 33 # UUCUCC 75 42 1.1e-003 1.4e+002
34
34 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013 35 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013
35 0.000000 0.000000 0.000000 1.000000 36 0.000000 0.000000 0.000000 1.000000
36 0.000000 0.000000 0.000000 1.000000 37 0.000000 0.000000 0.000000 1.000000
37 0.000000 0.294118 0.000000 0.705882 38 0.000000 0.294118 0.000000 0.705882
38 0.000000 0.000000 0.000000 1.000000 39 0.000000 0.000000 0.000000 1.000000
39 0.000000 1.000000 0.000000 0.000000 40 0.000000 1.000000 0.000000 0.000000
40 0.000000 0.474946 0.000000 0.525054 41 0.000000 0.474946 0.000000 0.525054
42
43
41 MOTIF YAGG DREME-2 44 MOTIF YAGG DREME-2
45
42 # Word Pos Neg P-value E-value 46 # Word Pos Neg P-value E-value
43 # BEST YAGG 600 416 1.1e-016 1.4e-011 47 # BEST YAGG 600 416 1.1e-016 1.4e-011
44 # CAGG 441 304 1.5e-010 1.8e-005 48 # CAGG 441 304 1.5e-010 1.8e-005
45 # UAGG 232 165 1.1e-004 1.3e+001 49 # UAGG 232 165 1.1e-004 1.3e+001
50
46 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011 51 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011
47 0.000000 0.692308 0.000000 0.307692 52 0.000000 0.692308 0.000000 0.307692
48 1.000000 0.000000 0.000000 0.000000 53 1.000000 0.000000 0.000000 0.000000
49 0.000000 0.000000 1.000000 0.000000 54 0.000000 0.000000 1.000000 0.000000
50 0.000000 0.000000 1.000000 0.000000 55 0.000000 0.000000 1.000000 0.000000
51 # Stopping reason: E-value threshold exceeded