Mercurial > repos > iuc > meme_psp_gen
comparison test-data/dreme1.xml @ 1:793225b11202 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author | iuc |
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date | Wed, 25 Apr 2018 12:13:08 -0400 |
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0:a0fa4efeeee3 | 1:793225b11202 |
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1 <dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> | |
2 <model> | |
3 <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line> | |
4 <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" /> | |
5 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> | |
6 <alphabet name="RNA" like="rna"> | |
7 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> | |
8 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> | |
9 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> | |
10 <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/> | |
11 <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/> | |
12 <letter id="V" symbol="V" equals="ACG" name="Not U"/> | |
13 <letter id="H" symbol="H" equals="ACU" name="Not G"/> | |
14 <letter id="D" symbol="D" equals="AGU" name="Not C"/> | |
15 <letter id="B" symbol="B" equals="CGU" name="Not A"/> | |
16 <letter id="M" symbol="M" equals="AC" name="Amino"/> | |
17 <letter id="R" symbol="R" equals="AG" name="Purine"/> | |
18 <letter id="W" symbol="W" equals="AU" name="Weak"/> | |
19 <letter id="S" symbol="S" equals="CG" name="Strong"/> | |
20 <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/> | |
21 <letter id="K" symbol="K" equals="GU" name="Keto"/> | |
22 </alphabet> | |
23 <strands>none</strands> | |
24 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> | |
25 <stop evalue="0"/> | |
26 <ngen>100</ngen> | |
27 <add_pv_thresh>0.01</add_pv_thresh> | |
28 <seed>1</seed> | |
29 <host>ThinkPad-T450s</host> | |
30 <when>Thu Apr 19 19:40:08 CEST 2018</when> | |
31 </model> | |
32 <motifs> |