Mercurial > repos > iuc > meme_psp_gen

comparison test-data/dreme_output_test2.xml @ 3:ff2f53a32d0e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:04:34 -0500
parents b48e673af4e8
children 5f95d385a33c
comparison
equal deleted inserted replaced
2:b48e673af4e8 3:ff2f53a32d0e
1 <dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> 1 <dreme version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
2 <model> 2 <model>
3 <command_line>dreme -o ./dreme_test2_out -p dreme_test_sites.fa -norc -rna -s 1 -e 1e-05 -g 100 -mink 4 -maxk 10</command_line>
4 <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 26 15:09:03 CEST 2018" />
5 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> 3 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/>
6 <alphabet name="RNA" like="rna"> 4 <alphabet name="RNA" like="rna">
7 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> 5 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/>
8 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> 6 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/>
9 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> 7 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/>
24 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> 22 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/>
25 <stop evalue="1e-05"/> 23 <stop evalue="1e-05"/>
26 <ngen>100</ngen> 24 <ngen>100</ngen>
27 <add_pv_thresh>0.01</add_pv_thresh> 25 <add_pv_thresh>0.01</add_pv_thresh>
28 <seed>1</seed> 26 <seed>1</seed>
29 <host>ThinkPad-T450s</host>
30 <when>Thu May 03 13:22:11 CEST 2018</when>
31 </model> 27 </model>
32 <motifs> 28 <motifs>
33 <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="3.3e-013" unerased_evalue="3.3e-013"> 29 <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="3.3e-013" unerased_evalue="3.3e-013">
34 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> 30 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
35 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> 31 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
49 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/> 45 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
50 <match seq="CAGG" p="441" n="304" pvalue="1.5e-010" evalue="1.8e-005"/> 46 <match seq="CAGG" p="441" n="304" pvalue="1.5e-010" evalue="1.8e-005"/>
51 <match seq="UAGG" p="232" n="165" pvalue="1.1e-004" evalue="1.3e+001"/> 47 <match seq="UAGG" p="232" n="165" pvalue="1.1e-004" evalue="1.3e+001"/>
52 </motif> 48 </motif>
53 </motifs> 49 </motifs>
54 <run_time cpu="15.97" real="15.97" stop="evalue"/>
55 </dreme> 50 </dreme>