Mercurial > repos > iuc > meme_psp_gen

comparison test-data/meme_output_test1.html @ 8:8436beac5eed draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:32:53 +0000
parents 5f95d385a33c
children
comparison
equal deleted inserted replaced
7:47e7ae719765 8:8436beac5eed
1 <script> 1 "sequences": [
2 { 2 {
3 $("opt_mod").className = data.options.mod; 3 "name": "chr21_19617074_19617124_+",
4 $("opt_objfun").textContent = data.options.objfun; 4 "length": 50,
5 $("opt_spfun").textContent = data.options.spfun; 5 "weight": 1.000000
6 $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); 6 }, {
7 $("opt_nmotifs").textContent = data.options.nmotifs; 7 "name": "chr21_26934381_26934431_+",
8 $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit"); 8 "length": 50,
9 $("opt_minw").textContent = data.options.minw; 9 "weight": 1.000000
10 $("opt_maxw").textContent = data.options.maxw; 10 }, {
11 $("opt_minsites").textContent = data.options.minsites; 11 "name": "chr21_28217753_28217803_-",
12 $("opt_maxsites").textContent = data.options.maxsites; 12 "length": 50,
13 $("opt_wnsites").textContent = data.options.wnsites; 13 "weight": 1.000000
14 $("opt_spmap").className = data.options.spmap; 14 }, {
15 $("opt_spfuzz").textContent = data.options.spfuzz; 15 "name": "chr21_31710037_31710087_-",
16 $("opt_prior").className = data.options.prior; 16 "length": 50,
17 if (data.options.prior == "dirichlet") { 17 "weight": 1.000000
18 $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true); 18 }, {
19 } else { 19 "name": "chr21_31744582_31744632_-",
20 $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source; 20 "length": 50,
21 } 21 "weight": 1.000000
22 $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b; 22 }, {
23 $("opt_maxiter").textContent = data.options.maxiter; 23 "name": "chr21_31768316_31768366_+",
24 $("opt_distance").textContent = data.options.distance; 24 "length": 50,
25 $("opt_searchsize").textContent = data.options.searchsize; 25 "weight": 1.000000
26 if (typeof data.options.csites != "undefined") { 26 }, {
27 $("opt_csites").textContent = data.options.csites; 27 "name": "chr21_31914206_31914256_-",
28 } else { 28 "length": 50,
29 $("opt_csites").parentElement.style.display = "none" 29 "weight": 1.000000
30 } 30 }, {
31 if (typeof data.options.wg != "undefined") { 31 "name": "chr21_31933633_31933683_-",
32 $("opt_wg").textContent = data.options.wg; 32 "length": 50,
33 } else { 33 "weight": 1.000000
34 $("opt_wg").parentElement.style.display = "none" 34 }, {
35 } 35 "name": "chr21_31962741_31962791_-",
36 if (typeof data.options.ws != "undefined") { 36 "length": 50,
37 $("opt_ws").textContent = data.options.ws; 37 "weight": 1.000000
38 } 38 }, {
39 else { 39 "name": "chr21_31964683_31964733_+",
40 $("opt_ws").parentElement.style.display = "none" 40 "length": 50,
41 } 41 "weight": 1.000000
42 if (typeof data.options.noendgaps != "undefined") { 42 }, {
43 $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off"); 43 "name": "chr21_31973364_31973414_+",
44 } 44 "length": 50,
45 else { 45 "weight": 1.000000
46 $("opt_noendgaps").parentElement.style.display = "none" 46 }, {
47 } 47 "name": "chr21_31992870_31992920_+",
48 $("opt_substring").className = (data.options.substring ? "on" : "off"); 48 "length": 50,
49 } 49 "weight": 1.000000
50 </script> 50 }, {
51 </div> 51 "name": "chr21_32185595_32185645_-",
52 <!-- list information on this program --> 52 "length": 50,
53 <div id="info_sec" class="bar"> 53 "weight": 1.000000
54 <div class="subsection"> 54 }, {
55 <h5 id="version">MEME version</h5> 55 "name": "chr21_32202076_32202126_-",
56 <span id="ins_version"></span> 56 "length": 50,
57 (Release date: <span id="ins_release"></span>)<br> 57 "weight": 1.000000
58 </div> 58 }, {
59 <script> 59 "name": "chr21_32253899_32253949_-",
60 $("ins_version").innerHTML = data["version"]; 60 "length": 50,
61 $("ins_release").innerHTML = data["release"]; 61 "weight": 1.000000
62 </script> 62 }, {
63 <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div> 63 "name": "chr21_32410820_32410870_-",
64 <div class="subsection"> 64 "length": 50,
65 <h5 id="command">Command line</h5> 65 "weight": 1.000000
66 <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly"> 66 }, {
67 </textarea> 67 "name": "chr21_36411748_36411798_-",
68 <script>$("cmd").value = data["cmd"].join(" ");</script> 68 "length": 50,
69 </div> 69 "weight": 1.000000
70 </div> 70 }, {
71 71 "name": "chr21_37838750_37838800_-",
72 </body> 72 "length": 50,
73 </html> 73 "weight": 1.000000
74 }, {
75 "name": "chr21_45705687_45705737_+",
76 "length": 50,
77 "weight": 1.000000
78 }, {
79 "name": "chr21_45971413_45971463_-",
80 "length": 50,
81 "weight": 1.000000
82 }, {
83 "name": "chr21_45978668_45978718_-",
84 "length": 50,
85 "weight": 1.000000
86 }, {
87 "name": "chr21_45993530_45993580_+",
88 "length": 50,
89 "weight": 1.000000
90 }, {
91 "name": "chr21_46020421_46020471_+",
92 "length": 50,
93 "weight": 1.000000
94 }, {
95 "name": "chr21_46031920_46031970_+",
96 "length": 50,
97 "weight": 1.000000
98 }, {
99 "name": "chr21_46046964_46047014_+",
100 "length": 50,
101 "weight": 1.000000
102 }, {
103 "name": "chr21_46057197_46057247_+",
104 "length": 50,
105 "weight": 1.000000
106 }, {
107 "name": "chr21_46086869_46086919_-",
108 "length": 50,
109 "weight": 1.000000
110 }, {
111 "name": "chr21_46102103_46102153_-",
112 "length": 50,
113 "weight": 1.000000
114 }, {
115 "name": "chr21_47517957_47518007_+",
116 "length": 50,
117 "weight": 1.000000
118 }, {
119 "name": "chr21_47575506_47575556_-",
120 "length": 50,
121 "weight": 1.000000
122 }
123 ]
124 },