Mercurial > repos > iuc > meme_psp_gen
diff test-data/dreme_output_test2.txt @ 6:5f95d385a33c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
| author | iuc |
|---|---|
| date | Sat, 09 Apr 2022 08:33:29 +0000 |
| parents | ff2f53a32d0e |
| children |
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--- a/test-data/dreme_output_test2.txt Sat Nov 27 14:38:09 2021 +0000 +++ b/test-data/dreme_output_test2.txt Sat Apr 09 08:33:29 2022 +0000 @@ -1,7 +1,3 @@ -# DREME 5.0.5 -# negatives: 1000 from shuffled positives - -MEME version 5.0.5 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC @@ -22,15 +18,20 @@ K "Keto" = GU T = U END ALPHABET + Background letter frequencies (from dataset): A 0.221 C 0.245 G 0.221 U 0.312 + + MOTIF UUYUCY DREME-1 + # Word Pos Neg P-value E-value # BEST UUYUCY 387 210 2.6e-018 3.3e-013 # UUUUCC 147 75 1.8e-007 2.2e-002 # UUUUCU 155 94 2.2e-005 2.8e+000 # UUCUCU 94 51 1.3e-004 1.7e+001 # UUCUCC 75 42 1.1e-003 1.4e+002 + letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 @@ -38,14 +39,17 @@ 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.474946 0.000000 0.525054 + + MOTIF YAGG DREME-2 + # Word Pos Neg P-value E-value # BEST YAGG 600 416 1.1e-016 1.4e-011 # CAGG 441 304 1.5e-010 1.8e-005 # UAGG 232 165 1.1e-004 1.3e+001 + letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011 0.000000 0.692308 0.000000 0.307692 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -0.000000 0.000000 1.000000 0.000000 -# Stopping reason: E-value threshold exceeded +0.000000 0.000000 1.000000 0.000000 \ No newline at end of file