diff test-data/fimo_output_almost-gff_1.txt @ 0:a0fa4efeeee3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 3f116ddc83447056068573320c148a9bfca9aa2e
author iuc
date Wed, 23 Aug 2017 20:57:34 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fimo_output_almost-gff_1.txt	Wed Aug 23 20:57:34 2017 -0400
@@ -0,0 +1,100 @@
+##gff-version 3
+phiX174	fimo	polypeptide_motif	1388	1398	102	+	.	Name=1;ID=1-1-phiX174;pvalue=6.36e-11;qvalue= 1.25e-09;sequence=AATATCTATAA;
+phiX174	fimo	polypeptide_motif	847	857	102	+	.	Name=1;ID=1-2-phiX174;pvalue=7.02e-11;qvalue= 1.25e-09;sequence=AATGTCTAAAG;
+phiX174	fimo	polypeptide_motif	2301	2311	99.6	+	.	Name=1;ID=1-3-phiX174;pvalue=1.08e-10;qvalue= 1.29e-09;sequence=AGGTTATAACG;
+phiX174	fimo	polypeptide_motif	5063	5073	95.6	+	.	Name=1;ID=1-4-phiX174;pvalue=2.73e-10;qvalue= 2.25e-09;sequence=AGGAGCTAAAG;
+phiX174	fimo	polypeptide_motif	989	999	 95	+	.	Name=1;ID=1-5-phiX174;pvalue=3.15e-10;qvalue= 2.25e-09;sequence=TGAGGATAAAT;
+phiX174	fimo	polypeptide_motif	4713	4723	91.1	+	.	Name=1;ID=1-6-phiX174;pvalue=7.74e-10;qvalue= 3.48e-09;sequence=GACTGCTATCA;
+phiX174	fimo	polypeptide_motif	5048	5058	90.7	+	.	Name=1;ID=1-7-phiX174;pvalue=8.51e-10;qvalue= 3.48e-09;sequence=TGCTGCTAAAG;
+phiX174	fimo	polypeptide_motif	855	865	90.6	+	.	Name=1;ID=1-8-phiX174;pvalue=8.64e-10;qvalue= 3.48e-09;sequence=AAGGTAAAAAA;
+phiX174	fimo	polypeptide_motif	3155	3165	90.1	+	.	Name=1;ID=1-9-phiX174;pvalue=9.76e-10;qvalue= 3.48e-09;sequence=TATGGCTAAAG;
+phiX174	fimo	polypeptide_motif	5009	5019	90.1	+	.	Name=1;ID=1-10-phiX174;pvalue=9.76e-10;qvalue= 3.48e-09;sequence=TGTGGCTAAAT;
+phiX174	fimo	polypeptide_motif	814	824	88.9	+	.	Name=1;ID=1-11-phiX174;pvalue=1.28e-09;qvalue= 4.14e-09;sequence=TGCGTCAAAAA;
+phiX174	fimo	polypeptide_motif	2832	2842	88.5	+	.	Name=1;ID=1-12-phiX174;pvalue=1.42e-09;qvalue= 4.23e-09;sequence=TTGGTCTAACT;
+phiX174	fimo	polypeptide_motif	3830	3840	87.7	+	.	Name=1;ID=1-13-phiX174;pvalue=1.7e-09;qvalue= 4.68e-09;sequence=TATTGATAAAG;
+phiX174	fimo	polypeptide_motif	3560	3570	87.2	+	.	Name=1;ID=1-14-phiX174;pvalue=1.89e-09;qvalue= 4.82e-09;sequence=TGCGTCTATTA;
+phiX174	fimo	polypeptide_motif	2882	2892	86.4	+	.	Name=1;ID=1-15-phiX174;pvalue=2.29e-09;qvalue= 5.46e-09;sequence=AGGTTATTAAA;
+phiX174	fimo	polypeptide_motif	4453	4463	85.9	+	.	Name=1;ID=1-16-phiX174;pvalue=2.58e-09;qvalue= 5.75e-09;sequence=AAGGTATTAAG;
+phiX174	fimo	polypeptide_motif	2493	2503	85.1	+	.	Name=1;ID=1-17-phiX174;pvalue=3.06e-09;qvalue= 5.79e-09;sequence=GACACCTAAAG;
+phiX174	fimo	polypeptide_motif	4104	4114	85.1	+	.	Name=1;ID=1-18-phiX174;pvalue=3.08e-09;qvalue= 5.79e-09;sequence=GGCTTCCATAA;
+phiX174	fimo	polypeptide_motif	4955	4965	85.1	+	.	Name=1;ID=1-19-phiX174;pvalue=3.08e-09;qvalue= 5.79e-09;sequence=TGATGCTAAAG;
+phiX174	fimo	polypeptide_motif	1885	1895	84.4	+	.	Name=1;ID=1-20-phiX174;pvalue=3.61e-09;qvalue= 6.45e-09;sequence=TGCGACTAAAG;
+phiX174	fimo	polypeptide_motif	3376	3386	84.2	+	.	Name=1;ID=1-21-phiX174;pvalue=3.81e-09;qvalue= 6.48e-09;sequence=AGAATCAAAAA;
+phiX174	fimo	polypeptide_motif	52	62	83.9	+	.	Name=1;ID=1-22-phiX174;pvalue=4.06e-09;qvalue= 6.58e-09;sequence=TGAGTCGAAAA;
+phiX174	fimo	polypeptide_motif	1390	1400	83.7	+	.	Name=1;ID=1-23-phiX174;pvalue=4.26e-09;qvalue= 6.61e-09;sequence=TATCTATAACA;
+phiX174	fimo	polypeptide_motif	2017	2027	83.4	+	.	Name=1;ID=1-24-phiX174;pvalue=4.6e-09;qvalue= 6.85e-09;sequence=TTCGTCTAAGA;
+phiX174	fimo	polypeptide_motif	1000	1010	83.1	+	.	Name=1;ID=1-25-phiX174;pvalue=4.88e-09;qvalue= 6.97e-09;sequence=TATGTCTAATA;
+phiX174	fimo	polypeptide_motif	1555	1565	82.5	+	.	Name=1;ID=1-26-phiX174;pvalue=5.58e-09;qvalue= 7.37e-09;sequence=GACTTCTACCA;
+phiX174	fimo	polypeptide_motif	4430	4440	82.5	+	.	Name=1;ID=1-27-phiX174;pvalue=5.62e-09;qvalue= 7.37e-09;sequence=TGAGTATAATT;
+phiX174	fimo	polypeptide_motif	1927	1937	82.3	+	.	Name=1;ID=1-28-phiX174;pvalue=5.82e-09;qvalue= 7.37e-09;sequence=GACTTATACCG;
+phiX174	fimo	polypeptide_motif	2981	2991	82.1	+	.	Name=1;ID=1-29-phiX174;pvalue=6.13e-09;qvalue= 7.37e-09;sequence=CATGTCTAAAT;
+phiX174	fimo	polypeptide_motif	4203	4213	 82	+	.	Name=1;ID=1-30-phiX174;pvalue=6.34e-09;qvalue= 7.37e-09;sequence=GACGGCCATAA;
+phiX174	fimo	polypeptide_motif	1669	1679	81.9	+	.	Name=1;ID=1-31-phiX174;pvalue=6.4e-09;qvalue= 7.37e-09;sequence=TGGAGGTAAAA;
+phiX174	fimo	polypeptide_motif	3260	3270	81.5	+	.	Name=1;ID=1-32-phiX174;pvalue=7.01e-09;qvalue= 7.82e-09;sequence=CGCTGATAAAG;
+phiX174	fimo	polypeptide_motif	3047	3057	81.3	+	.	Name=1;ID=1-33-phiX174;pvalue=7.4e-09;qvalue= 7.85e-09;sequence=TACCGATAACA;
+phiX174	fimo	polypeptide_motif	4176	4186	81.2	+	.	Name=1;ID=1-34-phiX174;pvalue=7.6e-09;qvalue= 7.85e-09;sequence=GAGTTCGATAA;
+phiX174	fimo	polypeptide_motif	4118	4128	81.1	+	.	Name=1;ID=1-35-phiX174;pvalue=7.7e-09;qvalue= 7.85e-09;sequence=GATGGATAACC;
+phiX174	fimo	polypeptide_motif	5370	5380	80.9	+	.	Name=1;ID=1-36-phiX174;pvalue=8.03e-09;qvalue= 7.87e-09;sequence=GGCGTATCCAA;
+phiX174	fimo	polypeptide_motif	1242	1252	80.5	+	.	Name=1;ID=1-37-phiX174;pvalue=8.94e-09;qvalue= 7.87e-09;sequence=AGTGGATTAAG;
+phiX174	fimo	polypeptide_motif	2583	2593	80.5	+	.	Name=1;ID=1-38-phiX174;pvalue=8.94e-09;qvalue= 7.87e-09;sequence=TACATCTGTCA;
+phiX174	fimo	polypeptide_motif	698	708	80.4	+	.	Name=1;ID=1-39-phiX174;pvalue=9.13e-09;qvalue= 7.87e-09;sequence=TACGGAAAACA;
+phiX174	fimo	polypeptide_motif	2299	2309	80.3	+	.	Name=1;ID=1-40-phiX174;pvalue=9.26e-09;qvalue= 7.87e-09;sequence=TGAGGTTATAA;
+phiX174	fimo	polypeptide_motif	4189	4199	80.1	+	.	Name=1;ID=1-41-phiX174;pvalue=9.69e-09;qvalue= 7.87e-09;sequence=GTGATATGTAT;
+phiX174	fimo	polypeptide_motif	275	285	80.1	+	.	Name=1;ID=1-42-phiX174;pvalue=9.85e-09;qvalue= 7.87e-09;sequence=GGTTTAGATAT;
+phiX174	fimo	polypeptide_motif	1801	1811	 80	+	.	Name=1;ID=1-43-phiX174;pvalue=1e-08;qvalue= 7.87e-09;sequence=GACCTATAAAC;
+phiX174	fimo	polypeptide_motif	1386	1396	79.9	+	.	Name=1;ID=1-44-phiX174;pvalue=1.03e-08;qvalue= 7.87e-09;sequence=TGAATATCTAT;
+phiX174	fimo	polypeptide_motif	1303	1313	79.8	+	.	Name=1;ID=1-45-phiX174;pvalue=1.03e-08;qvalue= 7.87e-09;sequence=TGGTTATATTG;
+phiX174	fimo	polypeptide_motif	3772	3782	79.8	+	.	Name=1;ID=1-46-phiX174;pvalue=1.04e-08;qvalue= 7.87e-09;sequence=AGGATATTTCT;
+phiX174	fimo	polypeptide_motif	1288	1298	79.8	+	.	Name=1;ID=1-47-phiX174;pvalue=1.04e-08;qvalue= 7.87e-09;sequence=GACTGTTAACA;
+phiX174	fimo	polypeptide_motif	2577	2587	79.7	+	.	Name=1;ID=1-48-phiX174;pvalue=1.08e-08;qvalue= 7.87e-09;sequence=GATGGATACAT;
+phiX174	fimo	polypeptide_motif	937	947	79.6	+	.	Name=1;ID=1-49-phiX174;pvalue=1.08e-08;qvalue= 7.87e-09;sequence=TTGGTATGTAG;
+phiX174	fimo	polypeptide_motif	904	914	79.5	+	.	Name=1;ID=1-50-phiX174;pvalue=1.11e-08;qvalue= 7.93e-09;sequence=AGGTACTAAAG;
+phiX174	fimo	polypeptide_motif	2279	2289	79.4	+	.	Name=1;ID=1-51-phiX174;pvalue=1.13e-08;qvalue= 7.93e-09;sequence=TCGTGATAAAA;
+phiX174	fimo	polypeptide_motif	3164	3174	79.3	+	.	Name=1;ID=1-52-phiX174;pvalue=1.16e-08;qvalue= 7.98e-09;sequence=AGCTGGTAAAG;
+phiX174	fimo	polypeptide_motif	24	34	79.1	+	.	Name=1;ID=1-53-phiX174;pvalue=1.23e-08;qvalue= 8.24e-09;sequence=AGAAGTTAACA;
+phiX174	fimo	polypeptide_motif	838	848	78.9	+	.	Name=1;ID=1-54-phiX174;pvalue=1.27e-08;qvalue= 8.24e-09;sequence=GAGTGATGTAA;
+phiX174	fimo	polypeptide_motif	853	863	78.9	+	.	Name=1;ID=1-55-phiX174;pvalue=1.27e-08;qvalue= 8.24e-09;sequence=TAAAGGTAAAA;
+phiX174	fimo	polypeptide_motif	1984	1994	78.6	+	.	Name=1;ID=1-56-phiX174;pvalue=1.36e-08;qvalue= 8.68e-09;sequence=AATTTCTATGA;
+phiX174	fimo	polypeptide_motif	1	11	78.3	+	.	Name=1;ID=1-57-phiX174;pvalue=1.46e-08;qvalue= 9.05e-09;sequence=GAGTTTTATCG;
+phiX174	fimo	polypeptide_motif	4307	4317	78.3	+	.	Name=1;ID=1-58-phiX174;pvalue=1.47e-08;qvalue= 9.05e-09;sequence=TATTAATAACA;
+phiX174	fimo	polypeptide_motif	4303	4313	78.2	+	.	Name=1;ID=1-59-phiX174;pvalue=1.52e-08;qvalue= 9.19e-09;sequence=TTGATATTAAT;
+phiX174	fimo	polypeptide_motif	5033	5043	 78	+	.	Name=1;ID=1-60-phiX174;pvalue=1.58e-08;qvalue= 9.41e-09;sequence=GTCAGATATGG;
+phiX174	fimo	polypeptide_motif	2579	2589	77.6	+	.	Name=1;ID=1-61-phiX174;pvalue=1.73e-08;qvalue= 1.01e-08;sequence=TGGATACATCT;
+phiX174	fimo	polypeptide_motif	322	332	77.4	+	.	Name=1;ID=1-62-phiX174;pvalue=1.82e-08;qvalue= 1.05e-08;sequence=GACATTTTAAA;
+phiX174	fimo	polypeptide_motif	5001	5011	76.8	+	.	Name=1;ID=1-63-phiX174;pvalue=2.09e-08;qvalue= 1.19e-08;sequence=GGTTTCTATGT;
+phiX174	fimo	polypeptide_motif	4217	4227	76.7	+	.	Name=1;ID=1-64-phiX174;pvalue=2.15e-08;qvalue= 1.2e-08;sequence=TGCTTCTGACG;
+phiX174	fimo	polypeptide_motif	4262	4272	76.6	+	.	Name=1;ID=1-65-phiX174;pvalue=2.18e-08;qvalue= 1.2e-08;sequence=AATGGATGAAT;
+phiX174	fimo	polypeptide_motif	3569	3579	76.5	+	.	Name=1;ID=1-66-phiX174;pvalue=2.26e-08;qvalue= 1.22e-08;sequence=TATGGAAAACA;
+phiX174	fimo	polypeptide_motif	194	204	76.4	+	.	Name=1;ID=1-67-phiX174;pvalue=2.29e-08;qvalue= 1.22e-08;sequence=ATCAACTAACG;
+phiX174	fimo	polypeptide_motif	131	141	 76	+	.	Name=1;ID=1-68-phiX174;pvalue=2.49e-08;qvalue= 1.31e-08;sequence=AAATGAGAAAA;
+phiX174	fimo	polypeptide_motif	1491	1501	75.9	+	.	Name=1;ID=1-69-phiX174;pvalue=2.55e-08;qvalue= 1.32e-08;sequence=GCCATCTCAAA;
+phiX174	fimo	polypeptide_motif	434	444	75.7	+	.	Name=1;ID=1-70-phiX174;pvalue=2.67e-08;qvalue= 1.36e-08;sequence=GGCCTCTATTA;
+phiX174	fimo	polypeptide_motif	4565	4575	75.6	+	.	Name=1;ID=1-71-phiX174;pvalue=2.73e-08;qvalue= 1.36e-08;sequence=TTGGTTTATCG;
+phiX174	fimo	polypeptide_motif	102	112	75.6	+	.	Name=1;ID=1-72-phiX174;pvalue=2.75e-08;qvalue= 1.36e-08;sequence=GAATTAAATCG;
+phiX174	fimo	polypeptide_motif	903	913	75.5	+	.	Name=1;ID=1-73-phiX174;pvalue=2.82e-08;qvalue= 1.38e-08;sequence=GAGGTACTAAA;
+phiX174	fimo	polypeptide_motif	4748	4758	75.2	+	.	Name=1;ID=1-74-phiX174;pvalue=3.01e-08;qvalue= 1.45e-08;sequence=TACAGCTAATG;
+phiX174	fimo	polypeptide_motif	2622	2632	 75	+	.	Name=1;ID=1-75-phiX174;pvalue=3.16e-08;qvalue= 1.5e-08;sequence=TGCTGATATTG;
+phiX174	fimo	polypeptide_motif	467	477	74.7	+	.	Name=1;ID=1-76-phiX174;pvalue=3.35e-08;qvalue= 1.57e-08;sequence=TTTGGATTTAA;
+phiX174	fimo	polypeptide_motif	4033	4043	74.6	+	.	Name=1;ID=1-77-phiX174;pvalue=3.44e-08;qvalue= 1.58e-08;sequence=AGCGTATCGAG;
+phiX174	fimo	polypeptide_motif	1348	1358	74.6	+	.	Name=1;ID=1-78-phiX174;pvalue=3.46e-08;qvalue= 1.58e-08;sequence=TACCAATAAAA;
+phiX174	fimo	polypeptide_motif	239	249	74.4	+	.	Name=1;ID=1-79-phiX174;pvalue=3.62e-08;qvalue= 1.64e-08;sequence=AGTGGCTTAAT;
+phiX174	fimo	polypeptide_motif	500	510	74.1	+	.	Name=1;ID=1-80-phiX174;pvalue=3.84e-08;qvalue= 1.71e-08;sequence=GACGAGTAACA;
+phiX174	fimo	polypeptide_motif	3001	3011	 74	+	.	Name=1;ID=1-81-phiX174;pvalue=3.93e-08;qvalue= 1.73e-08;sequence=GCGGTCAAAAA;
+phiX174	fimo	polypeptide_motif	3776	3786	 74	+	.	Name=1;ID=1-82-phiX174;pvalue=3.98e-08;qvalue= 1.73e-08;sequence=TATTTCTAATG;
+phiX174	fimo	polypeptide_motif	2026	2036	73.9	+	.	Name=1;ID=1-83-phiX174;pvalue=4.06e-08;qvalue= 1.75e-08;sequence=GAAGTTTAAGA;
+phiX174	fimo	polypeptide_motif	4237	4247	73.8	+	.	Name=1;ID=1-84-phiX174;pvalue=4.12e-08;qvalue= 1.75e-08;sequence=AGTTTGTATCT;
+phiX174	fimo	polypeptide_motif	803	813	73.7	+	.	Name=1;ID=1-85-phiX174;pvalue=4.24e-08;qvalue= 1.78e-08;sequence=AGAAGAAAACG;
+phiX174	fimo	polypeptide_motif	3770	3780	73.6	+	.	Name=1;ID=1-86-phiX174;pvalue=4.35e-08;qvalue= 1.81e-08;sequence=AAAGGATATTT;
+phiX174	fimo	polypeptide_motif	3429	3439	73.5	+	.	Name=1;ID=1-87-phiX174;pvalue=4.45e-08;qvalue= 1.82e-08;sequence=GAGATGCAAAA;
+phiX174	fimo	polypeptide_motif	99	109	73.5	+	.	Name=1;ID=1-88-phiX174;pvalue=4.48e-08;qvalue= 1.82e-08;sequence=TACGAATTAAA;
+phiX174	fimo	polypeptide_motif	67	77	73.2	+	.	Name=1;ID=1-89-phiX174;pvalue=4.78e-08;qvalue= 1.92e-08;sequence=TCTTGATAAAG;
+phiX174	fimo	polypeptide_motif	5332	5342	72.9	+	.	Name=1;ID=1-90-phiX174;pvalue=5.13e-08;qvalue= 2.01e-08;sequence=ATCTGCTCAAA;
+phiX174	fimo	polypeptide_motif	277	287	72.9	+	.	Name=1;ID=1-91-phiX174;pvalue=5.14e-08;qvalue= 2.01e-08;sequence=TTTAGATATGA;
+phiX174	fimo	polypeptide_motif	4338	4348	72.8	+	.	Name=1;ID=1-92-phiX174;pvalue=5.18e-08;qvalue= 2.01e-08;sequence=GGGGACGAAAA;
+phiX174	fimo	polypeptide_motif	3812	3822	72.8	+	.	Name=1;ID=1-93-phiX174;pvalue=5.28e-08;qvalue= 2.03e-08;sequence=GGTTGATATTT;
+phiX174	fimo	polypeptide_motif	1909	1919	72.6	+	.	Name=1;ID=1-94-phiX174;pvalue=5.51e-08;qvalue= 2.08e-08;sequence=TAACGCTAAAG;
+phiX174	fimo	polypeptide_motif	3000	3010	72.6	+	.	Name=1;ID=1-95-phiX174;pvalue=5.54e-08;qvalue= 2.08e-08;sequence=GGCGGTCAAAA;
+phiX174	fimo	polypeptide_motif	3891	3901	72.4	+	.	Name=1;ID=1-96-phiX174;pvalue=5.75e-08;qvalue= 2.11e-08;sequence=ATTGGCTCTAA;
+phiX174	fimo	polypeptide_motif	3079	3089	72.4	+	.	Name=1;ID=1-97-phiX174;pvalue=5.76e-08;qvalue= 2.11e-08;sequence=CTGGTATTAAA;
+phiX174	fimo	polypeptide_motif	37	47	72.4	+	.	Name=1;ID=1-98-phiX174;pvalue=5.79e-08;qvalue= 2.11e-08;sequence=TTCGGATATTT;
+phiX174	fimo	polypeptide_motif	380	390	72.2	+	.	Name=1;ID=1-99-phiX174;pvalue=6.01e-08;qvalue= 2.17e-08;sequence=GTAAGAAATCA;