Mercurial > repos > iuc > meme_psp_gen
diff test-data/fimo_output_test2.xml @ 3:ff2f53a32d0e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
| author | iuc |
|---|---|
| date | Wed, 11 Dec 2019 18:04:34 -0500 |
| parents | b48e673af4e8 |
| children | 5f95d385a33c |
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--- a/test-data/fimo_output_test2.xml Thu May 17 14:11:15 2018 -0400 +++ b/test-data/fimo_output_test2.xml Wed Dec 11 18:04:34 2019 -0500 @@ -1,16 +1,11 @@ <?xml version="1.0" encoding="UTF-8" standalone="no"?> <!-- Begin document body --> -<fimo version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700"> +<fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700"> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo" > -<command-line>fimo -oc fimo_test2_out --bgfile fimo_background_probs_hsa_chrM.txt dreme_fimo_input_1.xml hsa_chrM.fa</command-line> <settings> -<setting name="output directory">fimo_test2_out</setting> -<setting name="MEME file name">dreme_fimo_input_1.xml</setting> -<setting name="sequence file name">hsa_chrM.fa</setting> -<setting name="background file name">fimo_background_probs_hsa_chrM.txt</setting> -<setting name="allow clobber">true</setting> +<setting name="allow clobber">false</setting> <setting name="compute q-values">true</setting> <setting name="parse genomic coord.">false</setting> <setting name="text only">false</setting> @@ -45,7 +40,6 @@ <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/> <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/> <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/> -<background source="fimo_background_probs_hsa_chrM.txt"> <value letter="A">0.278</value> <value letter="C">0.222</value> <value letter="G">0.222</value>