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view test-data/meme_output_test1.xml @ 2:b48e673af4e8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
author iuc
date Thu, 17 May 2018 14:11:15 -0400
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<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set datafile CDATA #REQUIRED length CDATA #REQUIRED>
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_sequences,
  num_positions,
  seed,
  hsfrac,
  maxwords,
  maxsize,
  csites,
  strands,
  priors_file,
  reason_for_stopping,
  back_order,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_sequences (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT maxwords (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT back_order (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                llr CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                e_value CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700">
<training_set datafile="meme_input_1.fasta" length="30">
<alphabet name="Protein" like="protein">
<letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
<letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
<letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
<letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
<letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
<letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
<letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
<letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
<letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
<letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
<letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
<letter id="N" symbol="N" name="Asparagine" colour="008000"/>
<letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
<letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
<letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
<letter id="S" symbol="S" name="Serine" colour="008000"/>
<letter id="T" symbol="T" name="Threonine" colour="008000"/>
<letter id="V" symbol="V" name="Valine" colour="0000CC"/>
<letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
<letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
<letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
<letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
<letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
<letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
</alphabet>
<sequence id="sequence_0" name="chr21_19617074_19617124_+" length="50" weight="1.000000" />
<sequence id="sequence_1" name="chr21_26934381_26934431_+" length="50" weight="1.000000" />
<sequence id="sequence_2" name="chr21_28217753_28217803_-" length="50" weight="1.000000" />
<sequence id="sequence_3" name="chr21_31710037_31710087_-" length="50" weight="1.000000" />
<sequence id="sequence_4" name="chr21_31744582_31744632_-" length="50" weight="1.000000" />
<sequence id="sequence_5" name="chr21_31768316_31768366_+" length="50" weight="1.000000" />
<sequence id="sequence_6" name="chr21_31914206_31914256_-" length="50" weight="1.000000" />
<sequence id="sequence_7" name="chr21_31933633_31933683_-" length="50" weight="1.000000" />
<sequence id="sequence_8" name="chr21_31962741_31962791_-" length="50" weight="1.000000" />
<sequence id="sequence_9" name="chr21_31964683_31964733_+" length="50" weight="1.000000" />
<sequence id="sequence_10" name="chr21_31973364_31973414_+" length="50" weight="1.000000" />
<sequence id="sequence_11" name="chr21_31992870_31992920_+" length="50" weight="1.000000" />
<sequence id="sequence_12" name="chr21_32185595_32185645_-" length="50" weight="1.000000" />
<sequence id="sequence_13" name="chr21_32202076_32202126_-" length="50" weight="1.000000" />
<sequence id="sequence_14" name="chr21_32253899_32253949_-" length="50" weight="1.000000" />
<sequence id="sequence_15" name="chr21_32410820_32410870_-" length="50" weight="1.000000" />
<sequence id="sequence_16" name="chr21_36411748_36411798_-" length="50" weight="1.000000" />
<sequence id="sequence_17" name="chr21_37838750_37838800_-" length="50" weight="1.000000" />
<sequence id="sequence_18" name="chr21_45705687_45705737_+" length="50" weight="1.000000" />
<sequence id="sequence_19" name="chr21_45971413_45971463_-" length="50" weight="1.000000" />
<sequence id="sequence_20" name="chr21_45978668_45978718_-" length="50" weight="1.000000" />
<sequence id="sequence_21" name="chr21_45993530_45993580_+" length="50" weight="1.000000" />
<sequence id="sequence_22" name="chr21_46020421_46020471_+" length="50" weight="1.000000" />
<sequence id="sequence_23" name="chr21_46031920_46031970_+" length="50" weight="1.000000" />
<sequence id="sequence_24" name="chr21_46046964_46047014_+" length="50" weight="1.000000" />
<sequence id="sequence_25" name="chr21_46057197_46057247_+" length="50" weight="1.000000" />
<sequence id="sequence_26" name="chr21_46086869_46086919_-" length="50" weight="1.000000" />
<sequence id="sequence_27" name="chr21_46102103_46102153_-" length="50" weight="1.000000" />
<sequence id="sequence_28" name="chr21_47517957_47518007_+" length="50" weight="1.000000" />
<sequence id="sequence_29" name="chr21_47575506_47575556_-" length="50" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.294</value>
<value letter_id="C">0.231</value>
<value letter_id="D">0.000</value>
<value letter_id="E">0.000</value>
<value letter_id="F">0.000</value>
<value letter_id="G">0.257</value>
<value letter_id="H">0.000</value>
<value letter_id="I">0.000</value>
<value letter_id="K">0.000</value>
<value letter_id="L">0.000</value>
<value letter_id="M">0.000</value>
<value letter_id="N">0.000</value>
<value letter_id="P">0.000</value>
<value letter_id="Q">0.000</value>
<value letter_id="R">0.000</value>
<value letter_id="S">0.000</value>
<value letter_id="T">0.217</value>
<value letter_id="V">0.000</value>
<value letter_id="W">0.000</value>
<value letter_id="Y">0.000</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme meme_input_1.fasta -o meme_test1_out -nostatus -maxsize 1000000 </command_line>
<host>ThinkPad-T450s</host>
<type>zoops</type>
<nmotifs>1</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<use_llr>0</use_llr>
<min_width>8</min_width>
<max_width>50</max_width>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<substring>yes</substring>
<minsites>2</minsites>
<maxsites>30</maxsites>
<wnsites>0.8</wnsites>
<spmap>pam</spmap>
<spfuzz>120</spfuzz>
<prior>megap</prior>
<beta>7500</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_sequences>30</num_sequences>
<num_positions>1500</num_positions>
<seed>0</seed>
<ctfrac>-1</ctfrac>
<maxwords>-1</maxwords>
<strands>none</strands>
<priors_file>prior30.plib</priors_file>
<reason_for_stopping>Stopped because requested number of motifs (1) found.</reason_for_stopping>
<background_frequencies source="dataset with add-one prior applied">
<alphabet_array>
<value letter_id="A">0.291</value>
<value letter_id="C">0.229</value>
<value letter_id="D">0.001</value>
<value letter_id="E">0.001</value>
<value letter_id="F">0.001</value>
<value letter_id="G">0.255</value>
<value letter_id="H">0.001</value>
<value letter_id="I">0.001</value>
<value letter_id="K">0.001</value>
<value letter_id="L">0.001</value>
<value letter_id="M">0.001</value>
<value letter_id="N">0.001</value>
<value letter_id="P">0.001</value>
<value letter_id="Q">0.001</value>
<value letter_id="R">0.001</value>
<value letter_id="S">0.001</value>
<value letter_id="T">0.215</value>
<value letter_id="V">0.001</value>
<value letter_id="W">0.001</value>
<value letter_id="Y">0.001</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="GGGGTATAAAA" alt="MEME-1" width="11" sites="25" ic="40.0" re="13.8" llr="239" e_value="2.4e-011" bayes_threshold="5.33554" elapsed_time="0.772000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-32</value>
<value letter_id="C">-680</value>
<value letter_id="D">91</value>
<value letter_id="E">77</value>
<value letter_id="F">7</value>
<value letter_id="G">138</value>
<value letter_id="H">-20</value>
<value letter_id="I">55</value>
<value letter_id="K">64</value>
<value letter_id="L">107</value>
<value letter_id="M">11</value>
<value letter_id="N">150</value>
<value letter_id="P">142</value>
<value letter_id="Q">72</value>
<value letter_id="R">87</value>
<value letter_id="S">396</value>
<value letter_id="T">-148</value>
<value letter_id="V">221</value>
<value letter_id="W">-140</value>
<value letter_id="Y">-36</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-11</value>
<value letter_id="C">-680</value>
<value letter_id="D">89</value>
<value letter_id="E">76</value>
<value letter_id="F">7</value>
<value letter_id="G">137</value>
<value letter_id="H">-21</value>
<value letter_id="I">55</value>
<value letter_id="K">63</value>
<value letter_id="L">107</value>
<value letter_id="M">10</value>
<value letter_id="N">149</value>
<value letter_id="P">141</value>
<value letter_id="Q">71</value>
<value letter_id="R">87</value>
<value letter_id="S">396</value>
<value letter_id="T">-239</value>
<value letter_id="V">220</value>
<value letter_id="W">-140</value>
<value letter_id="Y">-36</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-79</value>
<value letter_id="C">41</value>
<value letter_id="D">4</value>
<value letter_id="E">21</value>
<value letter_id="F">-7</value>
<value letter_id="G">44</value>
<value letter_id="H">-62</value>
<value letter_id="I">42</value>
<value letter_id="K">-5</value>
<value letter_id="L">99</value>
<value letter_id="M">0</value>
<value letter_id="N">99</value>
<value letter_id="P">138</value>
<value letter_id="Q">52</value>
<value letter_id="R">42</value>
<value letter_id="S">399</value>
<value letter_id="T">-46</value>
<value letter_id="V">223</value>
<value letter_id="W">-173</value>
<value letter_id="Y">-68</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">11</value>
<value letter_id="C">-677</value>
<value letter_id="D">48</value>
<value letter_id="E">47</value>
<value letter_id="F">-2</value>
<value letter_id="G">127</value>
<value letter_id="H">-43</value>
<value letter_id="I">46</value>
<value letter_id="K">27</value>
<value letter_id="L">101</value>
<value letter_id="M">3</value>
<value letter_id="N">124</value>
<value letter_id="P">138</value>
<value letter_id="Q">60</value>
<value letter_id="R">62</value>
<value letter_id="S">397</value>
<value letter_id="T">-235</value>
<value letter_id="V">220</value>
<value letter_id="W">-160</value>
<value letter_id="Y">-55</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-596</value>
<value letter_id="C">-820</value>
<value letter_id="D">12</value>
<value letter_id="E">-21</value>
<value letter_id="F">-53</value>
<value letter_id="G">-267</value>
<value letter_id="H">-74</value>
<value letter_id="I">37</value>
<value letter_id="K">16</value>
<value letter_id="L">44</value>
<value letter_id="M">-37</value>
<value letter_id="N">98</value>
<value letter_id="P">31</value>
<value letter_id="Q">9</value>
<value letter_id="R">19</value>
<value letter_id="S">319</value>
<value letter_id="T">212</value>
<value letter_id="V">127</value>
<value letter_id="W">-193</value>
<value letter_id="Y">-95</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">165</value>
<value letter_id="C">-261</value>
<value letter_id="D">70</value>
<value letter_id="E">110</value>
<value letter_id="F">77</value>
<value letter_id="G">-521</value>
<value letter_id="H">-4</value>
<value letter_id="I">147</value>
<value letter_id="K">95</value>
<value letter_id="L">201</value>
<value letter_id="M">90</value>
<value letter_id="N">121</value>
<value letter_id="P">124</value>
<value letter_id="Q">91</value>
<value letter_id="R">107</value>
<value letter_id="S">425</value>
<value letter_id="T">-527</value>
<value letter_id="V">314</value>
<value letter_id="W">-95</value>
<value letter_id="Y">8</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-838</value>
<value letter_id="C">-990</value>
<value letter_id="D">-89</value>
<value letter_id="E">-149</value>
<value letter_id="F">-151</value>
<value letter_id="G">-841</value>
<value letter_id="H">-161</value>
<value letter_id="I">-117</value>
<value letter_id="K">-113</value>
<value letter_id="L">-66</value>
<value letter_id="M">-209</value>
<value letter_id="N">-68</value>
<value letter_id="P">-69</value>
<value letter_id="Q">-129</value>
<value letter_id="R">-91</value>
<value letter_id="S">111</value>
<value letter_id="T">221</value>
<value letter_id="V">-55</value>
<value letter_id="W">-255</value>
<value letter_id="Y">-173</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">176</value>
<value letter_id="C">-858</value>
<value letter_id="D">-79</value>
<value letter_id="E">-103</value>
<value letter_id="F">-115</value>
<value letter_id="G">-717</value>
<value letter_id="H">-148</value>
<value letter_id="I">-95</value>
<value letter_id="K">-108</value>
<value letter_id="L">-17</value>
<value letter_id="M">-162</value>
<value letter_id="N">-61</value>
<value letter_id="P">-12</value>
<value letter_id="Q">-95</value>
<value letter_id="R">-69</value>
<value letter_id="S">193</value>
<value letter_id="T">-737</value>
<value letter_id="V">52</value>
<value letter_id="W">-240</value>
<value letter_id="Y">-153</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">134</value>
<value letter_id="C">-686</value>
<value letter_id="D">0</value>
<value letter_id="E">16</value>
<value letter_id="F">-12</value>
<value letter_id="G">-553</value>
<value letter_id="H">-68</value>
<value letter_id="I">44</value>
<value letter_id="K">-8</value>
<value letter_id="L">96</value>
<value letter_id="M">-9</value>
<value letter_id="N">88</value>
<value letter_id="P">124</value>
<value letter_id="Q">41</value>
<value letter_id="R">36</value>
<value letter_id="S">384</value>
<value letter_id="T">11</value>
<value letter_id="V">216</value>
<value letter_id="W">-177</value>
<value letter_id="Y">-71</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">165</value>
<value letter_id="C">-261</value>
<value letter_id="D">70</value>
<value letter_id="E">110</value>
<value letter_id="F">77</value>
<value letter_id="G">-521</value>
<value letter_id="H">-4</value>
<value letter_id="I">147</value>
<value letter_id="K">95</value>
<value letter_id="L">201</value>
<value letter_id="M">90</value>
<value letter_id="N">121</value>
<value letter_id="P">124</value>
<value letter_id="Q">91</value>
<value letter_id="R">107</value>
<value letter_id="S">425</value>
<value letter_id="T">-527</value>
<value letter_id="V">314</value>
<value letter_id="W">-95</value>
<value letter_id="Y">8</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">147</value>
<value letter_id="C">-614</value>
<value letter_id="D">89</value>
<value letter_id="E">129</value>
<value letter_id="F">93</value>
<value letter_id="G">-121</value>
<value letter_id="H">12</value>
<value letter_id="I">160</value>
<value letter_id="K">113</value>
<value letter_id="L">217</value>
<value letter_id="M">108</value>
<value letter_id="N">144</value>
<value letter_id="P">144</value>
<value letter_id="Q">111</value>
<value letter_id="R">125</value>
<value letter_id="S">447</value>
<value letter_id="T">-241</value>
<value letter_id="V">332</value>
<value letter_id="W">-81</value>
<value letter_id="Y">22</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.240000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.680000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.080000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.280000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.680000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.040000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.160000</value>
<value letter_id="C">0.320000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.360000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.160000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.320000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.640000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.040000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.040000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.960000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.960000</value>
<value letter_id="C">0.040000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.000000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">1.000000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.000000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.760000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.240000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.960000</value>
<value letter_id="C">0.040000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.000000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.840000</value>
<value letter_id="C">0.000000</value>
<value letter_id="D">0.000000</value>
<value letter_id="E">0.000000</value>
<value letter_id="F">0.000000</value>
<value letter_id="G">0.120000</value>
<value letter_id="H">0.000000</value>
<value letter_id="I">0.000000</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.000000</value>
<value letter_id="M">0.000000</value>
<value letter_id="N">0.000000</value>
<value letter_id="P">0.000000</value>
<value letter_id="Q">0.000000</value>
<value letter_id="R">0.000000</value>
<value letter_id="S">0.000000</value>
<value letter_id="T">0.040000</value>
<value letter_id="V">0.000000</value>
<value letter_id="W">0.000000</value>
<value letter_id="Y">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[GA][GA][GC][GA]TATA[AT]AA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_24" position="12" strand="none" pvalue="1.06e-06" >
<left_flank>AAGGCCAGGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCCTGAGAGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_25" position="36" strand="none" pvalue="3.41e-06" >
<left_flank>ACAGGCCCTG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_19" position="9" strand="none" pvalue="3.41e-06" >
<left_flank>CAGGCCCTG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCCCCAGCAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="13" strand="none" pvalue="3.41e-06" >
<left_flank>GATTCACTGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GGCCCTCTGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_21" position="7" strand="none" pvalue="4.00e-06" >
<left_flank>CCAAGGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCCCCACAAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="13" strand="none" pvalue="5.01e-06" >
<left_flank>CCACCAGCTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGCCCTGTAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="15" strand="none" pvalue="6.06e-06" >
<left_flank>ATACCCAGGG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CCTCAGCAGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="21" strand="none" pvalue="8.67e-06" >
<left_flank>AATCACTGAG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GTCCCAGGGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="18" strand="none" pvalue="8.67e-06" >
<left_flank>CACCAGAGCT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGAAGGTTCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="16" strand="none" pvalue="8.67e-06" >
<left_flank>CACTATTGAA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TTTCATTTGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_22" position="2" strand="none" pvalue="1.21e-05" >
<left_flank>GA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCCAACATCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_28" position="32" strand="none" pvalue="1.59e-05" >
<left_flank>CCGGCGGGGC</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GGGGCGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_20" position="4" strand="none" pvalue="1.59e-05" >
<left_flank>CAGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GTTCCGACCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="15" strand="none" pvalue="1.68e-05" >
<left_flank>CCCACTACTT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCATTCTGAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="19" strand="none" pvalue="2.03e-05" >
<left_flank>CACCAGCAAG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GCTCAGGAGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="12" strand="none" pvalue="3.06e-05" >
<left_flank>CAGGTCTAAG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CTTGGAGTCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="39" strand="none" pvalue="3.06e-05" >
<left_flank>CCTCGGGACG</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_18" position="37" strand="none" pvalue="3.82e-05" >
<left_flank>CGTGGTCGCG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="0" strand="none" pvalue="3.82e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ATGGTCCTGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_29" position="30" strand="none" pvalue="4.02e-05" >
<left_flank>GCTGCCGGTG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GCCCTGGCG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="27" strand="none" pvalue="5.52e-05" >
<left_flank>AGTCACAAGT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GGGTCGCACG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="14" strand="none" pvalue="5.94e-05" >
<left_flank>CCCAGGTTTC</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCGCCGCACC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="22" strand="none" pvalue="6.78e-05" >
<left_flank>AGTTTCAGTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>attatataac</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="2" strand="none" pvalue="2.08e-04" >
<left_flank>TC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AAATGTTCCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="13" strand="none" pvalue="4.05e-04" >
<left_flank>TATAACTCAG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TAATTTGTAC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="39" pvalue="3.06e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="2.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="27" pvalue="5.52e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="7.29e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="2.37e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="14" pvalue="5.94e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="3.06e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="0" pvalue="3.82e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="6.70e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="1.68e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="1.81e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="4.54e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="1.61e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="3.41e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="1.99e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="16" pvalue="8.67e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="18" pvalue="8.67e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="2.01e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="5.01e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="8.11e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="19" pvalue="2.03e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="21" pvalue="8.67e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="2.71e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="22" pvalue="6.78e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="8.23e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_18" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="37" pvalue="3.82e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_19" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="9" pvalue="3.41e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_20" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="1.59e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_21" pvalue="1.60e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="7" pvalue="4.00e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_22" pvalue="4.83e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="2" pvalue="1.21e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_23" pvalue="2.43e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="6.06e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_24" pvalue="4.26e-05" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="1.06e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_25" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="36" pvalue="3.41e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_26" pvalue="4.30e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_27" pvalue="4.30e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_28" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="32" pvalue="1.59e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_29" pvalue="1.61e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="30" pvalue="4.02e-05"/>
</scanned_sites>
</scanned_sites_summary>
</MEME>