Mercurial > repos > iuc > meme_streme

annotate test-data/meme_output_custom.txt @ 0:7653ebd919bb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:08 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
1 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
2 MEME - Motif discovery tool
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
3 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
4 MEME version 5.5.8 (Release date: Thu May 15 15:01:46 2025 -0700)
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
5
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
6 For further information on how to interpret these results please access https://meme-suite.org/meme.
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
7 To get a copy of the MEME Suite software please access https://meme-suite.org.
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
8
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
9 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
10
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
11
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
12 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
13 REFERENCE
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
14 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
15 If you use this program in your research, please cite:
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
16
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
17 Timothy L. Bailey and Charles Elkan,
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
18 "Fitting a mixture model by expectation maximization to
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
19 discover motifs in biopolymers",
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
20 Proceedings of the Second International Conference on Intelligent Systems
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
21 for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
22 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
23
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
24
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
25 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
26 ALPHABET "DNA with covalent modifications" DNA-LIKE
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
27 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
28 A "Adenine" 8510A8 ~ T "Thymine" A89610
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
29 C "Cytosine" A50026 ~ G "Guanine" 313695
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
30 a "N6-methyladenine" 8510A8 ~ t "Thymine_lowercase" 756BB1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
31 c "5-Carboxylcytosine" FEE090 ~ 4 "Guanine:5-Carboxylcytosine" E0F3F8
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
32 f "5-Formylcytosine" FDAE61 ~ 3 "Guanine:5-Formylcytosine" ABD9E9
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
33 g "modified_g" 00897B ~ 5 "cytosine_lowercase" 53698A
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
34 h "5-Hydroxymethylcytosine" F46D43 ~ 2 "Guanine:5-Hydroxymethylcytosine" 74ADD1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
35 m "5-Methylcytosine" D73027 ~ 1 "Guanine:5-Methylcytosine" 4575B4
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
36 ? = ACGTacfghmt12345
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
37 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
38
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
39 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
40 TRAINING SET
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
41 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
42 PRIMARY SEQUENCES= Galaxy_FASTA_Input
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
43 CONTROL SEQUENCES= --none--
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
44 Sequence name Weight Length Sequence name Weight Length
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
45 ------------- ------ ------ ------------- ------ ------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
46 chr21_19617074_19617124_ 1.0000 50 chr21_26934381_26934431_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
47 chr21_28217753_28217803_ 1.0000 50 chr21_31710037_31710087_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
48 chr21_31744582_31744632_ 1.0000 50 chr21_31768316_31768366_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
49 chr21_31914206_31914256_ 1.0000 50 chr21_31933633_31933683_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
50 chr21_31962741_31962791_ 1.0000 50 chr21_31964683_31964733_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
51 chr21_31973364_31973414_ 1.0000 50 chr21_31992870_31992920_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
52 chr21_32185595_32185645_ 1.0000 50 chr21_32202076_32202126_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
53 chr21_32253899_32253949_ 1.0000 50 chr21_32410820_32410870_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
54 chr21_36411748_36411798_ 1.0000 50 chr21_37838750_37838800_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
55 chr21_45705687_45705737_ 1.0000 50 chr21_45971413_45971463_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
56 chr21_45978668_45978718_ 1.0000 50 chr21_45993530_45993580_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
57 chr21_46020421_46020471_ 1.0000 50 chr21_46031920_46031970_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
58 chr21_46046964_46047014_ 1.0000 50 chr21_46057197_46057247_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
59 chr21_46086869_46086919_ 1.0000 50 chr21_46102103_46102153_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
60 chr21_47517957_47518007_ 1.0000 50 chr21_47575506_47575556_ 1.0000 50
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
61 ********************************************************************************