annotate test-data/meme_output_test2.txt @ 0:7653ebd919bb draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:08 +0000
parents
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0
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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1 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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2 MOTIF GGSRTATAAAA MEME-1 width = 11 sites = 30 llr = 254 E-value = 5.1e-040
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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3 ********************************************************************************
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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4 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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5 Motif GGSRTATAAAA MEME-1 Description
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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6 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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7 Simplified A 3313:9:a798
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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8 pos.-specific C 1:3::1:::1:
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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9 probability G 6756::::::2
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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10 matrix T 1:11a1a:3::
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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11
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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12 bits 2.2 *
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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13 2.0 * *
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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14 1.8 * *
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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15 1.5 * ** *
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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16 Relative 1.3 * ** *
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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17 Entropy 1.1 ******
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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18 (12.2 bits) 0.9 * *******
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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19 0.7 * *******
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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20 0.4 ** ********
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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21 0.2 ***********
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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22 0.0 -----------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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23
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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24 Multilevel GGGGTATAAAA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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25 consensus AACA T
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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26 sequence
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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27
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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28 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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29
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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30 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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31 Motif GGSRTATAAAA MEME-1 sites sorted by position p-value
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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32 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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33 Sequence name Start P-value Site
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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34 ------------- ----- --------- -----------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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35 chr21_46046964_46047014_ 13 4.51e-07 AAGGCCAGGA GGGGTATAAAA GCCTGAGAGC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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36 chr21_46031920_46031970_ 16 2.22e-06 ATACCCAGGG AGGGTATAAAA CCTCAGCAGC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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37 chr21_32202076_32202126_ 14 2.74e-06 CCACCAGCTT GAGGTATAAAA AGCCCTGTAC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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38 chr21_46057197_46057247_ 37 4.86e-06 ACAGGCCCTG GGCATATAAAA GCC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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39 chr21_45993530_45993580_ 8 4.86e-06 CCAAGGA GGAGTATAAAA GCCCCACAAA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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40 chr21_45971413_45971463_ 10 4.86e-06 CAGGCCCTG GGCATATAAAA GCCCCAGCAG
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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41 chr21_31964683_31964733_ 14 4.86e-06 GATTCACTGA GGCATATAAAA GGCCCTCTGC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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42 chr21_47517957_47518007_ 33 6.48e-06 CCGGCGGGGC GGGGTATAAAG GGGGCGG
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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43 chr21_45978668_45978718_ 5 6.48e-06 CAGA GGGGTATAAAG GTTCCGACCA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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44 chr21_32185595_32185645_ 19 6.48e-06 CACCAGAGCT GGGATATATAA AGAAGGTTCT
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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45 chr21_32410820_32410870_ 22 1.38e-05 AATCACTGAG GATGTATAAAA GTCCCAGGGA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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46 chr21_31992870_31992920_ 17 1.38e-05 CACTATTGAA GATGTATAAAA TTTCATTTGC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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47 chr21_19617074_19617124_ 40 1.41e-05 CCTCGGGACG TGGGTATATAA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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48 chr21_31914206_31914256_ 16 1.61e-05 CCCACTACTT AGAGTATAAAA TCATTCTGAG
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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49 chr21_46020421_46020471_ 3 1.95e-05 GA GACATATAAAA GCCAACATCC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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50 chr21_32253899_32253949_ 18 1.95e-05 CCCACCAGCA AGGATATATAA AAGCTCAGGA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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51 chr21_45705687_45705737_ 38 2.16e-05 CGTGGTCGCG GGGGTATAACA GC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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52 chr21_47575506_47575556_ 31 3.04e-05 GCTGCCGGTG AGCGTATAAAG GCCCTGGCG
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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53 chr21_31744582_31744632_ 13 3.04e-05 CAGGTCTAAG AGCATATATAA CTTGGAGTCC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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54 chr21_31768316_31768366_ 1 3.67e-05 . AACGTATATAA ATGGTCCTGT
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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55 chr21_26934381_26934431_ 28 3.93e-05 AGTCACAAGT GAGTTATAAAA GGGTCGCACG
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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56 chr21_31933633_31933683_ 5 5.65e-05 TCAG AGTATATATAA ATGTTCCTGT
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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57 chr21_31710037_31710087_ 15 6.24e-05 CCCAGGTTTC TGAGTATATAA TCGCCGCACC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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58 chr21_36411748_36411798_ 23 7.15e-05 AGTTTCAGTT GGCATCtaaaa attatataac
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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59 chr21_46102103_46102153_ 37 1.39e-04 TGCCTGGGTC CAGGTATAAAG GCT
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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60 chr21_46086869_46086919_ 38 1.39e-04 TGCCTGGGCC CAGGTATAAAG GC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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61 chr21_37838750_37838800_ 3 4.81e-04 ga tggttttataa ggggcctcac
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
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62 chr21_31962741_31962791_ 14 8.57e-04 TATAACTCAG GTTGGATAAAA TAATTTGTAC
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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63 chr21_31973364_31973414_ 8 1.47e-03 aaactta aaactctataa acttaaaact
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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64 chr21_28217753_28217803_ 27 2.64e-03 GGTGGGGGTG GGGGTTTCACT GGTCCACTAT
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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65 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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66
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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67 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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68 Motif GGSRTATAAAA MEME-1 block diagrams
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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69 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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70 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
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71 ------------- ---------------- -------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
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72 chr21_46046964_46047014_ 4.5e-07 12_[+1]_27
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
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73 chr21_46031920_46031970_ 2.2e-06 15_[+1]_24
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
74 chr21_32202076_32202126_ 2.7e-06 13_[+1]_26
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
75 chr21_46057197_46057247_ 4.9e-06 36_[+1]_3
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
76 chr21_45993530_45993580_ 4.9e-06 7_[+1]_32
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
77 chr21_45971413_45971463_ 4.9e-06 9_[+1]_30
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
78 chr21_31964683_31964733_ 4.9e-06 13_[+1]_26
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
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79 chr21_47517957_47518007_ 6.5e-06 32_[+1]_7
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
80 chr21_45978668_45978718_ 6.5e-06 4_[+1]_35
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
81 chr21_32185595_32185645_ 6.5e-06 18_[+1]_21
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
82 chr21_32410820_32410870_ 1.4e-05 21_[+1]_18
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
83 chr21_31992870_31992920_ 1.4e-05 16_[+1]_23
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
84 chr21_19617074_19617124_ 1.4e-05 39_[+1]
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
85 chr21_31914206_31914256_ 1.6e-05 15_[+1]_24
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
86 chr21_46020421_46020471_ 1.9e-05 2_[+1]_37
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
87 chr21_32253899_32253949_ 1.9e-05 17_[+1]_22
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
88 chr21_45705687_45705737_ 2.2e-05 37_[+1]_2
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
89 chr21_47575506_47575556_ 3e-05 30_[+1]_9
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
90 chr21_31744582_31744632_ 3e-05 12_[+1]_27
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
91 chr21_31768316_31768366_ 3.7e-05 [+1]_39
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
92 chr21_26934381_26934431_ 3.9e-05 27_[+1]_12
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
93 chr21_31933633_31933683_ 5.6e-05 4_[+1]_35
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
94 chr21_31710037_31710087_ 6.2e-05 14_[+1]_25
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
95 chr21_36411748_36411798_ 7.1e-05 22_[+1]_17
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
96 chr21_46102103_46102153_ 0.00014 36_[+1]_3
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
97 chr21_46086869_46086919_ 0.00014 37_[+1]_2
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
98 chr21_37838750_37838800_ 0.00048 2_[+1]_37
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
99 chr21_31962741_31962791_ 0.00086 13_[+1]_26
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
100 chr21_31973364_31973414_ 0.0015 7_[+1]_32
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
101 chr21_28217753_28217803_ 0.0026 26_[+1]_13
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
102 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
103
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
104 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
105 Motif GGSRTATAAAA MEME-1 in BLOCKS format
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
106 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
107 BL MOTIF GGSRTATAAAA width=11 seqs=30
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
108 chr21_46046964_46047014_ ( 13) GGGGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
109 chr21_46031920_46031970_ ( 16) AGGGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
110 chr21_32202076_32202126_ ( 14) GAGGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
111 chr21_46057197_46057247_ ( 37) GGCATATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
112 chr21_45993530_45993580_ ( 8) GGAGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
113 chr21_45971413_45971463_ ( 10) GGCATATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
114 chr21_31964683_31964733_ ( 14) GGCATATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
115 chr21_47517957_47518007_ ( 33) GGGGTATAAAG 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
116 chr21_45978668_45978718_ ( 5) GGGGTATAAAG 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
117 chr21_32185595_32185645_ ( 19) GGGATATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
118 chr21_32410820_32410870_ ( 22) GATGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
119 chr21_31992870_31992920_ ( 17) GATGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
120 chr21_19617074_19617124_ ( 40) TGGGTATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
121 chr21_31914206_31914256_ ( 16) AGAGTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
122 chr21_46020421_46020471_ ( 3) GACATATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
123 chr21_32253899_32253949_ ( 18) AGGATATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
124 chr21_45705687_45705737_ ( 38) GGGGTATAACA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
125 chr21_47575506_47575556_ ( 31) AGCGTATAAAG 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
126 chr21_31744582_31744632_ ( 13) AGCATATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
127 chr21_31768316_31768366_ ( 1) AACGTATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
128 chr21_26934381_26934431_ ( 28) GAGTTATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
129 chr21_31933633_31933683_ ( 5) AGTATATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
130 chr21_31710037_31710087_ ( 15) TGAGTATATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
131 chr21_36411748_36411798_ ( 23) GGCATCTAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
132 chr21_46102103_46102153_ ( 37) CAGGTATAAAG 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
133 chr21_46086869_46086919_ ( 38) CAGGTATAAAG 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
134 chr21_37838750_37838800_ ( 3) TGGTTTTATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
135 chr21_31962741_31962791_ ( 14) GTTGGATAAAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
136 chr21_31973364_31973414_ ( 8) AAACTCTATAA 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
137 chr21_28217753_28217803_ ( 27) GGGGTTTCACT 1
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
138 //
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
139
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
140 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
141
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
142 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
143 Motif GGSRTATAAAA MEME-1 position-specific scoring matrix
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
144 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
145 log-odds matrix: alength= 4 w= 11 n= 1200 bayes= 5.2854 E= 5.1e-040
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
146 -14 -179 114 -112
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
147 3 -1155 137 -270
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
148 -114 20 86 -71
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
149 3 -279 122 -170
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
150 -1155 -1155 -295 215
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
151 156 -179 -1155 -170
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
152 -1155 -1155 -1155 220
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
153 172 -279 -1155 -1155
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
154 125 -1155 -1155 46
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
155 167 -179 -1155 -1155
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
156 144 -1155 -63 -270
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
157 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
158
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
159 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
160 Motif GGSRTATAAAA MEME-1 position-specific probability matrix
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
161 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
162 letter-probability matrix: alength= 4 w= 11 nsites= 30 E= 5.1e-040
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
163 0.266667 0.066667 0.566667 0.100000
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
164 0.300000 0.000000 0.666667 0.033333
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
165 0.133333 0.266667 0.466667 0.133333
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
166 0.300000 0.033333 0.600000 0.066667
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
167 0.000000 0.000000 0.033333 0.966667
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
168 0.866667 0.066667 0.000000 0.066667
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
169 0.000000 0.000000 0.000000 1.000000
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
170 0.966667 0.033333 0.000000 0.000000
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
171 0.700000 0.000000 0.000000 0.300000
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
iuc
parents:
diff changeset
172 0.933333 0.066667 0.000000 0.000000
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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173 0.800000 0.000000 0.166667 0.033333
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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174 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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175
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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176 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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177 Motif GGSRTATAAAA MEME-1 regular expression
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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178 --------------------------------------------------------------------------------
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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179 [GA][GA][GC][GA]TATA[AT]AA
7653ebd919bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
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180 --------------------------------------------------------------------------------