Mercurial > repos > iuc > meme_streme

view test-data/meme_output_custom.txt @ 0:7653ebd919bb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:08 +0000
parents
children
line wrap: on
line source

********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.8 (Release date: Thu May 15 15:01:46 2025 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
ALPHABET "DNA with covalent modifications" DNA-LIKE
********************************************************************************
A "Adenine" 8510A8 ~ T "Thymine" A89610
C "Cytosine" A50026 ~ G "Guanine" 313695
a "N6-methyladenine" 8510A8 ~ t "Thymine_lowercase" 756BB1
c "5-Carboxylcytosine" FEE090 ~ 4 "Guanine:5-Carboxylcytosine" E0F3F8
f "5-Formylcytosine" FDAE61 ~ 3 "Guanine:5-Formylcytosine" ABD9E9
g "modified_g" 00897B ~ 5 "cytosine_lowercase" 53698A
h "5-Hydroxymethylcytosine" F46D43 ~ 2 "Guanine:5-Hydroxymethylcytosine" 74ADD1
m "5-Methylcytosine" D73027 ~ 1 "Guanine:5-Methylcytosine" 4575B4
? = ACGTacfghmt12345
********************************************************************************

********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= Galaxy_FASTA_Input
CONTROL SEQUENCES= --none--
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
chr21_19617074_19617124_ 1.0000     50  chr21_26934381_26934431_ 1.0000     50  
chr21_28217753_28217803_ 1.0000     50  chr21_31710037_31710087_ 1.0000     50  
chr21_31744582_31744632_ 1.0000     50  chr21_31768316_31768366_ 1.0000     50  
chr21_31914206_31914256_ 1.0000     50  chr21_31933633_31933683_ 1.0000     50  
chr21_31962741_31962791_ 1.0000     50  chr21_31964683_31964733_ 1.0000     50  
chr21_31973364_31973414_ 1.0000     50  chr21_31992870_31992920_ 1.0000     50  
chr21_32185595_32185645_ 1.0000     50  chr21_32202076_32202126_ 1.0000     50  
chr21_32253899_32253949_ 1.0000     50  chr21_32410820_32410870_ 1.0000     50  
chr21_36411748_36411798_ 1.0000     50  chr21_37838750_37838800_ 1.0000     50  
chr21_45705687_45705737_ 1.0000     50  chr21_45971413_45971463_ 1.0000     50  
chr21_45978668_45978718_ 1.0000     50  chr21_45993530_45993580_ 1.0000     50  
chr21_46020421_46020471_ 1.0000     50  chr21_46031920_46031970_ 1.0000     50  
chr21_46046964_46047014_ 1.0000     50  chr21_46057197_46057247_ 1.0000     50  
chr21_46086869_46086919_ 1.0000     50  chr21_46102103_46102153_ 1.0000     50  
chr21_47517957_47518007_ 1.0000     50  chr21_47575506_47575556_ 1.0000     50  
********************************************************************************