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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:08 +0000
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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.8 (Release date: Thu May 15 15:01:46 2025 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
********************************************************************************


ALPHABET= ACDEFGHIKLMNPQRSTVWY

strands: +

Background letter frequencies
A 0.279 C 0.225 D 3.03e-05 E 3.03e-05 F 3.03e-05 G 0.28 H 3.03e-05 I 3.03e-05 K 3.03e-05 L 3.03e-05 M 0.0079 N 3.03e-05 P 3.03e-05 Q 3.03e-05 R 3.03e-05 S 3.03e-05 T 0.208 V 3.03e-05 W 3.03e-05 Y 3.03e-05 

MOTIF 1-GCMGG STREME-1
letter-probability matrix: alength= 20 w= 5 nsites= 7 S= 5.5e-003
 0.007759 0.006261 0.000001 0.000001 0.000001 0.979973 0.000001 0.000001 0.000001 0.000001 0.000220 0.000001 0.000001 0.000001 0.000001 0.000001 0.005774 0.000001 0.000001 0.000001
 0.007759 0.588717 0.000001 0.000001 0.000001 0.397517 0.000001 0.000001 0.000001 0.000001 0.000220 0.000001 0.000001 0.000001 0.000001 0.000001 0.005774 0.000001 0.000001 0.000001
 0.007759 0.006261 0.000001 0.000001 0.000001 0.007776 0.000001 0.000001 0.000001 0.000001 0.972417 0.000001 0.000001 0.000001 0.000001 0.000001 0.005774 0.000001 0.000001 0.000001
 0.007759 0.006261 0.000001 0.000001 0.000001 0.979973 0.000001 0.000001 0.000001 0.000001 0.000220 0.000001 0.000001 0.000001 0.000001 0.000001 0.005774 0.000001 0.000001 0.000001
 0.007759 0.006261 0.000001 0.000001 0.000001 0.787258 0.000001 0.000001 0.000001 0.000001 0.000220 0.000001 0.000001 0.000001 0.000001 0.000001 0.198490 0.000001 0.000001 0.000001

MOTIF 2-GGTMA STREME-2
letter-probability matrix: alength= 20 w= 5 nsites= 6 S= 5.2e-002
 0.166242 0.005192 0.000001 0.000001 0.000001 0.823585 0.000001 0.000001 0.000001 0.000001 0.000182 0.000001 0.000001 0.000001 0.000001 0.000001 0.004788 0.000001 0.000001 0.000001
 0.006434 0.164999 0.000001 0.000001 0.000001 0.823585 0.000001 0.000001 0.000001 0.000001 0.000182 0.000001 0.000001 0.000001 0.000001 0.000001 0.004788 0.000001 0.000001 0.000001
 0.006434 0.005192 0.000001 0.000001 0.000001 0.006448 0.000001 0.000001 0.000001 0.000001 0.000182 0.000001 0.000001 0.000001 0.000001 0.000001 0.981733 0.000001 0.000001 0.000001
 0.006434 0.277760 0.000001 0.000001 0.000001 0.166256 0.000001 0.000001 0.000001 0.000001 0.479605 0.000001 0.000001 0.000001 0.000001 0.000001 0.069935 0.000001 0.000001 0.000001
 0.823572 0.164999 0.000001 0.000001 0.000001 0.006448 0.000001 0.000001 0.000001 0.000001 0.000182 0.000001 0.000001 0.000001 0.000001 0.000001 0.004788 0.000001 0.000001 0.000001

MOTIF 3-GTATAAAATCA STREME-3
letter-probability matrix: alength= 20 w= 11 nsites= 8 S= 9.3e-002
 0.008845 0.007137 0.000001 0.000001 0.000001 0.977170 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.006583 0.000001 0.000001 0.000001
 0.008845 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.974888 0.000001 0.000001 0.000001
 0.977151 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.006583 0.000001 0.000001 0.000001
 0.008845 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.974888 0.000001 0.000001 0.000001
 0.977151 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.006583 0.000001 0.000001 0.000001
 0.757464 0.007137 0.000001 0.000001 0.000001 0.228552 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.006583 0.000001 0.000001 0.000001
 0.757464 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.226270 0.000001 0.000001 0.000001
 0.757464 0.007137 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.226270 0.000001 0.000001 0.000001
 0.008845 0.226824 0.000001 0.000001 0.000001 0.228552 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.535514 0.000001 0.000001 0.000001
 0.008845 0.885886 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.096140 0.000001 0.000001 0.000001
 0.448220 0.226824 0.000001 0.000001 0.000001 0.008864 0.000001 0.000001 0.000001 0.000001 0.000250 0.000001 0.000001 0.000001 0.000001 0.000001 0.315827 0.000001 0.000001 0.000001

MOTIF 4-GAGGTG STREME-4
letter-probability matrix: alength= 20 w= 6 nsites= 5 S= 9.8e-002
 0.007829 0.200766 0.000001 0.000001 0.000001 0.785344 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.005826 0.000001 0.000001 0.000001
 0.979776 0.006317 0.000001 0.000001 0.000001 0.007846 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.005826 0.000001 0.000001 0.000001
 0.202278 0.041933 0.000001 0.000001 0.000001 0.670460 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.085095 0.000001 0.000001 0.000001
 0.007829 0.200766 0.000001 0.000001 0.000001 0.785344 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.005826 0.000001 0.000001 0.000001
 0.007829 0.006317 0.000001 0.000001 0.000001 0.007846 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.977773 0.000001 0.000001 0.000001
 0.087098 0.006317 0.000001 0.000001 0.000001 0.900525 0.000001 0.000001 0.000001 0.000001 0.000222 0.000001 0.000001 0.000001 0.000001 0.000001 0.005826 0.000001 0.000001 0.000001

MOTIF 5-TCACACACA STREME-5
letter-probability matrix: alength= 20 w= 9 nsites= 5 S= 9.8e-002
 0.007502 0.192368 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.792388 0.000001 0.000001 0.000001
 0.193817 0.716905 0.000001 0.000001 0.000001 0.083471 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.005583 0.000001 0.000001 0.000001
 0.794307 0.006053 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.191898 0.000001 0.000001 0.000001
 0.007502 0.903220 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.081536 0.000001 0.000001 0.000001
 0.794307 0.006053 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.191898 0.000001 0.000001 0.000001
 0.007502 0.792858 0.000001 0.000001 0.000001 0.193833 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.005583 0.000001 0.000001 0.000001
 0.718354 0.082006 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.191898 0.000001 0.000001 0.000001
 0.007502 0.979173 0.000001 0.000001 0.000001 0.007518 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.005583 0.000001 0.000001 0.000001
 0.532038 0.006053 0.000001 0.000001 0.000001 0.193833 0.000001 0.000001 0.000001 0.000001 0.000212 0.000001 0.000001 0.000001 0.000001 0.000001 0.267851 0.000001 0.000001 0.000001