Mercurial > repos > iuc > meningotype

annotate check_output.py @ 1:7f88b804fc0c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit ac4610f4f81de5ab3a71fc28cbe3cdb1696ef667
author iuc
date Wed, 13 Mar 2024 11:52:59 +0000
parents b5f872c50249
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
1 #!/usr/bin/env python3
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
2
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
3 import argparse
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
4 import sys
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
5
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
6 if __name__ == '__main__':
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
7 parser = argparse.ArgumentParser()
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
8 parser.add_argument('meningotype_file', type=argparse.FileType())
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
9 args = parser.parse_args()
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
10 for line in args.meningotype_file:
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
11 if 'ERROR:' in line:
b5f872c50249 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff changeset
12 sys.exit('Found error in meningotype output: ' + line.strip())