Mercurial > repos > iuc > merqury
view test-data/output_05_log.txt @ 4:09c589057ee8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/merqury commit 2c0e1d33bb5a462cd31bb4ad1ec4821520caccd4
| author | iuc |
|---|---|
| date | Thu, 10 Aug 2023 22:57:52 +0000 |
| parents | f8113c25bc6b |
| children |
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read: read-db.meryl Haplotype dbs provided. Running Merqury in trio mode... hap1: pat.meryl hap2: mat.meryl asm1: assembly_01.fasta asm2: assembly_02.fasta out : output_05 Get spectra-cn plots and QV stats Get blob plots Get haplotype specfic spectra-cn plots Get phase blocks Get block N plots No modules available.. # Generate assembly_01.fasta.fai *** # Found assembly_01.gaps.bed *** # No gaps found. This is a contig set. # Generate assembly_02.fasta.fai *** # Found assembly_02.gaps.bed *** # No gaps found. This is a contig set. # Convert output_05.assembly_01.100_20000.phased_block.bed to sizes Result saved as output_05.assembly_01.100_20000.phased_block.sizes # Plot output_05.assembly_01.100_20000.phased_block.bed Rscript /usr/local/share/merqury/plot/plot_block_N.R -b output_05.assembly_01.100_20000.phased_block.sizes -c output_05.assembly_01.contig.sizes -o output_05.assembly_01 Loading required package: argparse Loading required package: ggplot2 Loading required package: scales Error in read.table(dat, header = F) : no lines available in input Calls: block_n -> attach_n -> read.table Execution halted # Convert output_05.assembly_02.100_20000.phased_block.bed to sizes Result saved as output_05.assembly_02.100_20000.phased_block.sizes # Plot output_05.assembly_02.100_20000.phased_block.bed Rscript /usr/local/share/merqury/plot/plot_block_N.R -b output_05.assembly_02.100_20000.phased_block.sizes -c output_05.assembly_02.contig.sizes -o output_05.assembly_02 Loading required package: argparse Loading required package: ggplot2 Loading required package: scales Error in read.table(dat, header = F) : no lines available in input Calls: block_n -> attach_n -> read.table Execution halted